; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc02g17480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g17480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr2:13077633..13078293
RNA-Seq ExpressionMoc02g17480
SyntenyMoc02g17480
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]9.0e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]9.0e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]9.0e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]9.0e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]6.4e-70100Show/hide
Query:  MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT
        MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT
Subjt:  MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT

Query:  TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
        TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
Subjt:  TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X24.4e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X34.4e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X14.4e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
A0A5D3CLI6 T4.54.4e-3264.75Show/hide
Query:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT
        T  S++ +KD  SPIFLLSNICNL+S+RLDST+F+LWKFQLTAILKAHKL+GFIDG+   P +       T +  +T+T  P  NP +EDWIAKDQALMT
Subjt:  TSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMT

Query:  LINATLSAEALAYVVRSGTSKQ
        +INATLS EALAYVV S +SKQ
Subjt:  LINATLSAEALAYVVRSGTSKQ
A0A6J1D9L6 uncharacterized protein LOC1110188923.1e-70100Show/hide
Query:  MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT
        MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT
Subjt:  MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTT

Query:  TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
        TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
Subjt:  TSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.3e-0425Show/hide
Query:  LHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEA
        L++   L  N+ N+   +L ST++++W  Q+ A+   ++L GF+DGS + P   +            T + P +NP +  W  +D+ + + +   +S   
Subjt:  LHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEA

Query:  LAYVVRSGTSKQ
           V R+ T+ Q
Subjt:  LAYVVRSGTSKQ
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.7e-0426.32Show/hide
Query:  RLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
        +L ST++++W  Q+ A+   ++L GF+DGS   P   +            T ++P +NP +  W  +D+ + + I   +S      V R+ T+ Q
Subjt:  RLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQ
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTCTCATTCACTTTTCAATTCCCACGTGTATCTTTCTTTCGTTCAAGCGTTTTTGCGATGACGTCTTCTTCAACAAACACAAAGAAAGATCTTCATTCTCCCAT
ATTTCTCTTATCAAACATCTGCAATTTGGTTTCGATTCGTCTTGATTCAACCGATTTTATTCTATGGAAATTTCAACTTACTGCTATTTTGAAGGCACACAAGTTGTTTG
GTTTTATTGATGGATCAGTATCTGCACCGTCACAATTTCTTGCTTCTTCATCAGAGACTGAATCTCAACCAACAACCACTACTTCCTTGCCAGTGATCAATCCTCATTTT
GAAGATTGGATTGCAAAAGATCAAGCACTCATGACCTTGATCAATGCTACTCTTTCTGCTGAAGCCCTAGCTTATGTTGTTCGCAGCGGAACTTCTAAACAGAGTATAAT
ACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTCTCATTCACTTTTCAATTCCCACGTGTATCTTTCTTTCGTTCAAGCGTTTTTGCGATGACGTCTTCTTCAACAAACACAAAGAAAGATCTTCATTCTCCCAT
ATTTCTCTTATCAAACATCTGCAATTTGGTTTCGATTCGTCTTGATTCAACCGATTTTATTCTATGGAAATTTCAACTTACTGCTATTTTGAAGGCACACAAGTTGTTTG
GTTTTATTGATGGATCAGTATCTGCACCGTCACAATTTCTTGCTTCTTCATCAGAGACTGAATCTCAACCAACAACCACTACTTCCTTGCCAGTGATCAATCCTCATTTT
GAAGATTGGATTGCAAAAGATCAAGCACTCATGACCTTGATCAATGCTACTCTTTCTGCTGAAGCCCTAGCTTATGTTGTTCGCAGCGGAACTTCTAAACAGAGTATAAT
ACTTTAA
Protein sequenceShow/hide protein sequence
MFLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHF
EDWIAKDQALMTLINATLSAEALAYVVRSGTSKQSIIL