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Moc02g17560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g17560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr2:13133250..13137190
RNA-Seq ExpressionMoc02g17560
SyntenyMoc02g17560
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048592.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-3548.11Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KAN+KA ++ILAS+SD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        I                           + I+++K  GKG   D  IA   KGKA V  KGKCF+CNVDGHWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-3649.19Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M  S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KANDKA+++ILASISD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        +                           + I+K+K  GKG  P   IA   KGKAKV  KGKCF+CNVD HWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

TYK00234.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-3549.19Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DL F+L E+CP  P  N +    N YDC  KANDK+ +YILAS+S++ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
                                    K I+K+K  GKG  P   IAA  KGKAKV  KGK F+CNVD HWKRN PKYL KKKK
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

TYK27179.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-3548.11Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KAN+KA ++ILAS+SD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        I                           + I+++K  GKG   D  IA   KGKA V  KGKCF+CNVDGHWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]1.7e-3578.22Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M  S IALLA +KLNG+NY+QWKSNLNT+LVIDDLRFVLQEDCPQAP+SN TV   N YD  IK+NDKA VYILASISDV AKKHEDTVT KEI+DSLQS
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I
        +
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A5A7TYH7 Gag/pol protein1.8e-3548.11Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KAN+KA ++ILAS+SD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        I                           + I+++K  GKG   D  IA   KGKA V  KGKCF+CNVDGHWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

A0A5A7VJG3 Gag/pol protein4.7e-3649.19Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M  S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KANDKA+++ILASISD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        +                           + I+K+K  GKG  P   IA   KGKAKV  KGKCF+CNVD HWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

A0A5D3BLT3 Gag/pol protein1.4e-3549.19Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DL F+L E+CP  P  N +    N YDC  KANDK+ +YILAS+S++ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
                                    K I+K+K  GKG  P   IAA  KGKAKV  KGK F+CNVD HWKRN PKYL KKKK
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

A0A5D3DUY5 Gag/pol protein1.8e-3548.11Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M +S IALL + +L G+NY  WKS LN +LVI DLRFVL E+CP  P    +    + YDC  KAN+KA ++ILAS+SD+ +KKHE  VTA++I+DSL+ 
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK
        I                           + I+++K  GKG   D  IA   KGKA V  KGKCF+CNVDGHWK NCPKYL KKK+
Subjt:  I---------------------------KTIKKKKAIGKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKK

A0A6J1DWL0 uncharacterized protein LOC1110247348.0e-3678.22Show/hide
Query:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS
        M  S IALLA +KLNG+NY+QWKSNLNT+LVIDDLRFVLQEDCPQAP+SN TV   N YD  IK+NDKA VYILASISDV AKKHEDTVT KEI+DSLQS
Subjt:  MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQS

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACTTCTTTTATTGCCTTGTTAGCCGAGAAAAAACTTAACGGCAAGAATTACAAACAATGGAAATCGAATCTAAACACTGTACTTGTGATAGATGATCTTAGGTT
CGTCTTGCAAGAGGATTGTCCTCAAGCTCCTATGTCTAACACCACTGTGGTGGAGCACAACGTCTATGACTGCTGCATCAAAGCCAACGACAAGGCCAATGTCTACATCT
TGGCGAGCATATCTGATGTGTTTGCTAAGAAGCACGAGGACACGGTCACCGCTAAAGAGATCGTGGACTCGCTACAGAGCATTAAGACTATCAAGAAGAAGAAGGCTATT
GGTAAAGGGTCTAAACCTGACTCCGTTATTGCCGCTGCCAAGAAAGGAAAGGCCAAGGTTGCAGACAAAGGAAAATGTTTCTACTGCAACGTGGACGGGCATTGGAAGCG
CAATTGCCCGAAATACCTGGCCAAGAAGAAGAAAGCCAACAAAGATAGTTATATAGTTGACGAGAATAACGTCGAGGATGACCTGGGCATTAACGAGGAGGAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTACTTCTTTTATTGCCTTGTTAGCCGAGAAAAAACTTAACGGCAAGAATTACAAACAATGGAAATCGAATCTAAACACTGTACTTGTGATAGATGATCTTAGGTT
CGTCTTGCAAGAGGATTGTCCTCAAGCTCCTATGTCTAACACCACTGTGGTGGAGCACAACGTCTATGACTGCTGCATCAAAGCCAACGACAAGGCCAATGTCTACATCT
TGGCGAGCATATCTGATGTGTTTGCTAAGAAGCACGAGGACACGGTCACCGCTAAAGAGATCGTGGACTCGCTACAGAGCATTAAGACTATCAAGAAGAAGAAGGCTATT
GGTAAAGGGTCTAAACCTGACTCCGTTATTGCCGCTGCCAAGAAAGGAAAGGCCAAGGTTGCAGACAAAGGAAAATGTTTCTACTGCAACGTGGACGGGCATTGGAAGCG
CAATTGCCCGAAATACCTGGCCAAGAAGAAGAAAGCCAACAAAGATAGTTATATAGTTGACGAGAATAACGTCGAGGATGACCTGGGCATTAACGAGGAGGAGATATGA
Protein sequenceShow/hide protein sequence
MPTSFIALLAEKKLNGKNYKQWKSNLNTVLVIDDLRFVLQEDCPQAPMSNTTVVEHNVYDCCIKANDKANVYILASISDVFAKKHEDTVTAKEIVDSLQSIKTIKKKKAI
GKGSKPDSVIAAAKKGKAKVADKGKCFYCNVDGHWKRNCPKYLAKKKKANKDSYIVDENNVEDDLGINEEEI