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Moc02g17650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g17650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:13215245..13216081
RNA-Seq ExpressionMoc02g17650
SyntenyMoc02g17650
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.4e-4842.4Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MDEIT LWE F  T DE+ET+ ID G+ I++++NV LC V KLHTSK+IS E   SVMKSVW+VH                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY
                                                       KLG+VEE+E +GAD WA PFIRVRV+I      R  +K++ +DGKD+WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY

Query:  EKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE
        EKLPDF YECG++GHSGREC+QRS   T+N   QYG WL A LLKK+  + +E+   RGGR  RG +   GRGG G+W R  E
Subjt:  EKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]4.4e-4284.16Show/hide
Query:  MKVQITDGKDLWCPLRYEKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE
        MK+Q TDGKDLWCPLRYEKLPDF YECGRMGHSGRE +QR PEGT NGSAQYGSWL A LLKKN MN+DE+WEQRGGRS RGF+ GSGRGG GEWSRSGE
Subjt:  MKVQITDGKDLWCPLRYEKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE

Query:  Y
        Y
Subjt:  Y

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]4.0e-1934.83Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MDEIT+LWE FTLT ++ ETI IDS + +M+ ENV   AVGKLHTSK+IS E F SVMKS+W+VH                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY
                                                       ++GEVEE++C G+  W  PFIRVRV+I      +  +KV+  D K+ WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY

Query:  E
        E
Subjt:  E

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]3.4e-2635.16Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MD+ITKLWE FTL  +E +TI ID+ + I++ +N+ LCAVGKLH SK+I+ E F SVMK VW++H                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRIRCI------MKVQITDGKDLWCPLRY
                                                       +LGEVEEV+   +  W  PF+ VRV+I  +      +KV+ +DGKD+WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRIRCI------MKVQITDGKDLWCPLRY

Query:  EKLPDFYYECGRMGHSGRE
        E+LPDF Y CG +GHS RE
Subjt:  EKLPDFYYECGRMGHSGRE

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]2.3e-1449.41Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVHKLGEVEEVECEGADSWAVPF
        MDEIT+LWE F LT +E ET  +D+ Q I+++EN+ LC VGKLHTSK+IS +   SVMK VW++H   E   +E  G + + + F
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVHKLGEVEEVECEGADSWAVPF

TrEMBL top hitse value%identityAlignment
A0A6J1D765 uncharacterized protein LOC1110179026.8e-4942.4Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MDEIT LWE F  T DE+ET+ ID G+ I++++NV LC V KLHTSK+IS E   SVMKSVW+VH                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY
                                                       KLG+VEE+E +GAD WA PFIRVRV+I      R  +K++ +DGKD+WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY

Query:  EKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE
        EKLPDF YECG++GHSGREC+QRS   T+N   QYG WL A LLKK+  + +E+   RGGR  RG +   GRGG G+W R  E
Subjt:  EKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE

A0A6J1DAR4 uncharacterized protein LOC1110189542.1e-4284.16Show/hide
Query:  MKVQITDGKDLWCPLRYEKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE
        MK+Q TDGKDLWCPLRYEKLPDF YECGRMGHSGRE +QR PEGT NGSAQYGSWL A LLKKN MN+DE+WEQRGGRS RGF+ GSGRGG GEWSRSGE
Subjt:  MKVQITDGKDLWCPLRYEKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGE

Query:  Y
        Y
Subjt:  Y

A0A6J1DP89 uncharacterized protein LOC1110229321.9e-1934.83Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MDEIT+LWE FTLT ++ ETI IDS + +M+ ENV   AVGKLHTSK+IS E F SVMKS+W+VH                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY
                                                       ++GEVEE++C G+  W  PFIRVRV+I      +  +KV+  D K+ WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRI------RCIMKVQITDGKDLWCPLRY

Query:  E
        E
Subjt:  E

A0A6J1DVS4 uncharacterized protein LOC1110235551.6e-2635.16Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------
        MD+ITKLWE FTL  +E +TI ID+ + I++ +N+ LCAVGKLH SK+I+ E F SVMK VW++H                                   
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVH-----------------------------------

Query:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRIRCI------MKVQITDGKDLWCPLRY
                                                       +LGEVEEV+   +  W  PF+ VRV+I  +      +KV+ +DGKD+WCPLRY
Subjt:  -----------------------------------------------KLGEVEEVECEGADSWAVPFIRVRVRIRCI------MKVQITDGKDLWCPLRY

Query:  EKLPDFYYECGRMGHSGRE
        E+LPDF Y CG +GHS RE
Subjt:  EKLPDFYYECGRMGHSGRE

A0A6J1DYG3 uncharacterized protein LOC1110246761.1e-1449.41Show/hide
Query:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVHKLGEVEEVECEGADSWAVPF
        MDEIT+LWE F LT +E ET  +D+ Q I+++EN+ LC VGKLHTSK+IS +   SVMK VW++H   E   +E  G + + + F
Subjt:  MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVHKLGEVEEVECEGADSWAVPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAATCACAAAGCTTTGGGAGGGGTTTACTCTCACCTTTGATGAAAGTGAAACTATTGCGATTGATAGTGGTCAGCTGATTATGTCATCTGAGAATGTGAGTCT
TTGCGCGGTAGGGAAACTTCATACCAGTAAGCAAATAAGTACGGAGGAATTCTGTTCTGTGATGAAGTCGGTGTGGCAAGTTCACAAGTTGGGGGAGGTTGAAGAGGTGG
AATGTGAAGGTGCTGATAGTTGGGCAGTGCCTTTTATTCGTGTCCGGGTTAGGATTAGATGTATAATGAAAGTCCAAATCACTGATGGTAAAGATCTGTGGTGCCCACTC
CGGTATGAGAAGCTACCAGATTTCTACTATGAGTGTGGAAGAATGGGACATTCGGGGCGGGAGTGTAAGCAGCGGTCCCCCGAGGGTACTTCTAATGGCTCTGCACAATA
TGGTAGTTGGCTTCATGCCTGTTTACTGAAGAAAAACTCGATGAATCGGGATGAGAAGTGGGAGCAGAGAGGAGGCCGTTCGAGGAGGGGCTTTCGATGTGGTAGTGGTC
GAGGTGGGCATGGAGAGTGGAGCAGAAGTGGAGAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAATCACAAAGCTTTGGGAGGGGTTTACTCTCACCTTTGATGAAAGTGAAACTATTGCGATTGATAGTGGTCAGCTGATTATGTCATCTGAGAATGTGAGTCT
TTGCGCGGTAGGGAAACTTCATACCAGTAAGCAAATAAGTACGGAGGAATTCTGTTCTGTGATGAAGTCGGTGTGGCAAGTTCACAAGTTGGGGGAGGTTGAAGAGGTGG
AATGTGAAGGTGCTGATAGTTGGGCAGTGCCTTTTATTCGTGTCCGGGTTAGGATTAGATGTATAATGAAAGTCCAAATCACTGATGGTAAAGATCTGTGGTGCCCACTC
CGGTATGAGAAGCTACCAGATTTCTACTATGAGTGTGGAAGAATGGGACATTCGGGGCGGGAGTGTAAGCAGCGGTCCCCCGAGGGTACTTCTAATGGCTCTGCACAATA
TGGTAGTTGGCTTCATGCCTGTTTACTGAAGAAAAACTCGATGAATCGGGATGAGAAGTGGGAGCAGAGAGGAGGCCGTTCGAGGAGGGGCTTTCGATGTGGTAGTGGTC
GAGGTGGGCATGGAGAGTGGAGCAGAAGTGGAGAATATTGA
Protein sequenceShow/hide protein sequence
MDEITKLWEGFTLTFDESETIAIDSGQLIMSSENVSLCAVGKLHTSKQISTEEFCSVMKSVWQVHKLGEVEEVECEGADSWAVPFIRVRVRIRCIMKVQITDGKDLWCPL
RYEKLPDFYYECGRMGHSGRECKQRSPEGTSNGSAQYGSWLHACLLKKNSMNRDEKWEQRGGRSRRGFRCGSGRGGHGEWSRSGEY