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Moc02g18150 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g18150
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:13576398..13583493
RNA-Seq ExpressionMoc02g18150
SyntenyMoc02g18150
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054657.1 uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa]1.1e-2543.35Show/hide
Query:  KESARRWREANEQLTVPLIDKEPQNKSFIE--RKNKVQAVISKCKWRYQQGFAVYNPSTVPINSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISY
        KE A+RWRE   Q+  PL DKE     FI   R      ++      +     +        N S    +             +    KQ  F PIP+SY
Subjt:  KESARRWREANEQLTVPLIDKEPQNKSFIE--RKNKVQAVISKCKWRYQQGFAVYNPSTVPINSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISY

Query:  TELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQ
        TELL QL +SH +A+VP EPLQP YPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+K  WLKF K + +
Subjt:  TELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQ

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]1.9e-2571.6Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK
        KQ  F PIP+SYTELL QL +SH +A+VP EPLQP YPKWYDP V C+YHAG VGHSTENC  LK KVQ L+K GWLKF K
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.2e-2563.22Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV
        KQ  F PIP++YTELL QLFQ++ LA VPV+P+QP YP+WYD    CDYHAGA+ HSTENCT LK++VQ L+K GW  F KE+G  V
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]4.0e-3662.25Show/hide
Query:  KVEFTFQDGQTSKVKYSDKLKGKEKENATNENAEETAGKESARRWREANEQLTVPLIDKEP---QNKSFIERKNKVQAVISKCKWRYQQGFAVYNPSTVP
        +VEFTF+D QT KV YSD LKG+EKEN T             +RW +A EQL VPLI+KEP    NKS I+RKNKV AV+SK K +YQQGF  Y+PSTVP
Subjt:  KVEFTFQDGQTSKVKYSDKLKGKEKENATNENAEETAGKESARRWREANEQLTVPLIDKEP---QNKSFIERKNKVQAVISKCKWRYQQGFAVYNPSTVP

Query:  INSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISYTELLSQLFQSHL
        INS  LQ+DP      LPNNH S RQLK+ESFH IP SYTELLSQLFQ +L
Subjt:  INSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISYTELLSQLFQSHL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]7.6e-2765.52Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV
        KQ  F PIP++YTELL QLFQ++ LA VPV+P+QP YP+WYD    CDYHAGA+GHSTENCT+LK++VQ L+K GWL F KE+G  V
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV

TrEMBL top hitse value%identityAlignment
A0A5A7UJ84 Retrotrans_gag domain-containing protein5.3e-2643.35Show/hide
Query:  KESARRWREANEQLTVPLIDKEPQNKSFIE--RKNKVQAVISKCKWRYQQGFAVYNPSTVPINSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISY
        KE A+RWRE   Q+  PL DKE     FI   R      ++      +     +        N S    +             +    KQ  F PIP+SY
Subjt:  KESARRWREANEQLTVPLIDKEPQNKSFIE--RKNKVQAVISKCKWRYQQGFAVYNPSTVPINSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISY

Query:  TELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQ
        TELL QL +SH +A+VP EPLQP YPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+K  WLKF K + +
Subjt:  TELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQ

A0A5A7ULI2 Retrotrans_gag domain-containing protein9.0e-2671.6Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK
        KQ  F PIP+SYTELL QL +SH +A+VP EPLQP YPKWYDP V C+YHAG VGHSTENC  LK KVQ L+K GWLKF K
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK

A0A5A7VAU5 Uncharacterized protein1.5e-2570.37Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK
        KQ  F PIP+SYTELL QL +SH +A+VP EPLQP YPKWYDP   C+YHAGAVGHSTENC  LK KVQ L+K GWL+F K
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSK

A0A6J1DHS7 uncharacterized protein LOC1110210291.9e-3662.25Show/hide
Query:  KVEFTFQDGQTSKVKYSDKLKGKEKENATNENAEETAGKESARRWREANEQLTVPLIDKEP---QNKSFIERKNKVQAVISKCKWRYQQGFAVYNPSTVP
        +VEFTF+D QT KV YSD LKG+EKEN T             +RW +A EQL VPLI+KEP    NKS I+RKNKV AV+SK K +YQQGF  Y+PSTVP
Subjt:  KVEFTFQDGQTSKVKYSDKLKGKEKENATNENAEETAGKESARRWREANEQLTVPLIDKEP---QNKSFIERKNKVQAVISKCKWRYQQGFAVYNPSTVP

Query:  INSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISYTELLSQLFQSHL
        INS  LQ+DP      LPNNH S RQLK+ESFH IP SYTELLSQLFQ +L
Subjt:  INSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISYTELLSQLFQSHL

A0A6J1E2J7 Ribonuclease H3.7e-2765.52Show/hide
Query:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV
        KQ  F PIP++YTELL QLFQ++ LA VPV+P+QP YP+WYD    CDYHAGA+GHSTENCT+LK++VQ L+K GWL F KE+G  V
Subjt:  KQESFHPIPISYTELLSQLFQSHLLALVPVEPLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACGATTTTTGCGGAAGAGTTTGCTAAATTCCAACAGTATCAAGAGTCATTGATGGCATCATCCTCTAATCCAATTACTGTCATTGTTGATTCAGGATCT
TACAATGAAGAAGACTACTGTACCGGTCAGGGGGAGCAGTCACAGGAAGATGATACCTTTCTTGTCTATTCTATTGTCTCTACTTCAATTGAAGAACTTCCTAGC
AATACATCTCCCTCTGCGCCTGATCCTTCTCTCTCCACTATTACTCAAGTTTATTCTCGTCGGCAACCTCCTACGGACTCATGCCCTATACCAGCAGCTTCTTTG
CCTGTGGATCCAGGAACAAGTGATGACCTTCCTATTGCCCTTCGAAAAGGCTTGGGCGAGTTGCAGGCCATGGAGATGTTGCATAATTGGTCCAATGAAAGAGTT
GGTGCGGTGGAGAAGAAGCCATGGATGAAGAGTTTTTCAAAAAATTCAATTGTGACGGGGAAGGTTGAATTCACATTCCAAGATGGACAAACATCAAAAGTCAAA
TACTCAGATAAGTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATGAAAATGCTGAAGAAACTGCAGGGAAAGAAAGTGCACGGAGATGGAGAGAGGCAAACGAA
CAACTGACAGTGCCTTTAATTGATAAAGAGCCACAAAATAAAAGCTTCATCGAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGTGCAAGTGGAGGTACCAA
CAAGGATTCGCGGTATACAATCCGTCTACAGTACCCATAAACTCATCGGCTCTGCAGAATGACCCACATCTAAGATTGTCAGCATTACCTAACAATCATAAGAGT
ATGAGGCAACTAAAGCAAGAGAGTTTTCATCCAATCCCAATATCCTATACCGAGCTGTTATCACAATTATTTCAAAGTCATCTACTAGCTCTGGTACCTGTAGAA
CCATTGCAGCCACGTTATCCAAAGTGGTATGACCCGCAAGTCCACTGTGATTACCATGCAGGAGCTGTAGGTCATTCGACAGAGAACTGTACTTCACTAAAGCAT
AAAGTGCAAGTTCTAATGAAGGTAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACGTGAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACGATTTTTGCGGAAGAGTTTGCTAAATTCCAACAGTATCAAGAGTCATTGATGGCATCATCCTCTAATCCAATTACTGTCATTGTTGATTCAGGATCT
TACAATGAAGAAGACTACTGTACCGGTCAGGGGGAGCAGTCACAGGAAGATGATACCTTTCTTGTCTATTCTATTGTCTCTACTTCAATTGAAGAACTTCCTAGC
AATACATCTCCCTCTGCGCCTGATCCTTCTCTCTCCACTATTACTCAAGTTTATTCTCGTCGGCAACCTCCTACGGACTCATGCCCTATACCAGCAGCTTCTTTG
CCTGTGGATCCAGGAACAAGTGATGACCTTCCTATTGCCCTTCGAAAAGGCTTGGGCGAGTTGCAGGCCATGGAGATGTTGCATAATTGGTCCAATGAAAGAGTT
GGTGCGGTGGAGAAGAAGCCATGGATGAAGAGTTTTTCAAAAAATTCAATTGTGACGGGGAAGGTTGAATTCACATTCCAAGATGGACAAACATCAAAAGTCAAA
TACTCAGATAAGTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATGAAAATGCTGAAGAAACTGCAGGGAAAGAAAGTGCACGGAGATGGAGAGAGGCAAACGAA
CAACTGACAGTGCCTTTAATTGATAAAGAGCCACAAAATAAAAGCTTCATCGAAAGGAAAAATAAAGTCCAGGCAGTAATCTCGAAGTGCAAGTGGAGGTACCAA
CAAGGATTCGCGGTATACAATCCGTCTACAGTACCCATAAACTCATCGGCTCTGCAGAATGACCCACATCTAAGATTGTCAGCATTACCTAACAATCATAAGAGT
ATGAGGCAACTAAAGCAAGAGAGTTTTCATCCAATCCCAATATCCTATACCGAGCTGTTATCACAATTATTTCAAAGTCATCTACTAGCTCTGGTACCTGTAGAA
CCATTGCAGCCACGTTATCCAAAGTGGTATGACCCGCAAGTCCACTGTGATTACCATGCAGGAGCTGTAGGTCATTCGACAGAGAACTGTACTTCACTAAAGCAT
AAAGTGCAAGTTCTAATGAAGGTAGGATGGCTAAAGTTTTCAAAGGAAGATGGTCAACACGTGAAGCACTAG
Protein sequenceShow/hide protein sequence
MVTIFAEEFAKFQQYQESLMASSSNPITVIVDSGSYNEEDYCTGQGEQSQEDDTFLVYSIVSTSIEELPSNTSPSAPDPSLSTITQVYSRRQPPTDSCPIPAASL
PVDPGTSDDLPIALRKGLGELQAMEMLHNWSNERVGAVEKKPWMKSFSKNSIVTGKVEFTFQDGQTSKVKYSDKLKGKEKENATNENAEETAGKESARRWREANE
QLTVPLIDKEPQNKSFIERKNKVQAVISKCKWRYQQGFAVYNPSTVPINSSALQNDPHLRLSALPNNHKSMRQLKQESFHPIPISYTELLSQLFQSHLLALVPVE
PLQPRYPKWYDPQVHCDYHAGAVGHSTENCTSLKHKVQVLMKVGWLKFSKEDGQHVKH