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Moc02g18220 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g18220
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr2:13627241..13628188
RNA-Seq ExpressionMoc02g18220
SyntenyMoc02g18220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048153.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-0543.59Show/hide
Query:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK
        P  + ER  +  YK+ LRG + LD RTNPSK   DD++       +P GLIT+ +A+K+Q+A  L VQ   N+ RE K
Subjt:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK

XP_022157215.1 uncharacterized protein LOC111023977 [Momordica charantia]5.5e-11177.99Show/hide
Query:  MFHTRRSQKSKFHNSRRYHDNHHGQDPYTKELVGIRKNINDFNELCHEFKMRYEDMKSHAAKSVQKEEDRPMPQEDNHQQIPNERENQDGVEDTNVETVM
        MFHT RSQKSKFH+SRR +DNHHG DPYTKELVGIRKNIND NELC EFKM YEDM+ HA KSV+KE D PMPQE+NHQ IPNE ENQD V+DTNVETVM
Subjt:  MFHTRRSQKSKFHNSRRYHDNHHGQDPYTKELVGIRKNINDFNELCHEFKMRYEDMKSHAAKSVQKEEDRPMPQEDNHQQIPNERENQDGVEDTNVETVM

Query:  HAQQKDFNIDVIIYDAEEDLHLKVLMHDEYTTKEEALVAKAVEITNIVKIEDCKESNQLQNEDLGNTEKQHSLIALKPMENQIPWTHGPVYWGFKPGIWN
        HA+Q+DFNIDV+IYDAEED+H++VL  DEYTT EE L+ KA+EITNIV++ + K+S QLQN DLGNT+KQHSLIA  P++NQIPWT GPVYWGFKP IW 
Subjt:  HAQQKDFNIDVIIYDAEEDLHLKVLMHDEYTTKEEALVAKAVEITNIVKIEDCKESNQLQNEDLGNTEKQHSLIALKPMENQIPWTHGPVYWGFKPGIWN

Query:  KTARFLFTTSNYKFIIQIYYPINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQG
        KTARF FT SNYKFIIQIYY IN+FERAQD EYKVAL+GDP+DSRTNPS+ GEDDMNQG
Subjt:  KTARFLFTTSNYKFIIQIYYPINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQG

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]3.2e-1059.09Show/hide
Query:  PINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQ
        P  + ER  D  YK+ L GD  DSRTNPS+  EDD+NQG+   MP G ITRSR++KLQQALL  VQ
Subjt:  PINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQ

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]5.6e-0756.06Show/hide
Query:  YKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKED
        Y     GD  DSRTNPSK GEDDMNQ A   +P G ITRSRA++LQ A    +QA V+ST   +ED
Subjt:  YKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKED

XP_038900633.1 uncharacterized protein LOC120087799 [Benincasa hispida]4.0e-0550.79Show/hide
Query:  RGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKEDVQ
        +GD    RTNPS+  EDD N+G    M  G I RSRA+KL QAL+  +QA V ST+++ EDV+
Subjt:  RGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKEDVQ

TrEMBL top hitse value%identityAlignment
A0A5A7TX19 Reverse transcriptase1.5e-0543.59Show/hide
Query:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK
        P  + ER  +  YK+ LRG + LD RTNPSK   DD++       +P GLIT+ +A+K+Q+A  L VQ   N+ RE K
Subjt:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK

A0A5D3DRJ1 F15O4.137.4e-0542.31Show/hide
Query:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK
        P  + ER  +  YK+ LRG + LD RTNPSK   DD++       +P G IT+ +A+K+Q+A  L VQ   N+ RE K
Subjt:  PINIFERAQDVEYKVALRG-DPLDSRTNPSKAGEDDMNQ-GAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELK

A0A6J1DSH3 uncharacterized protein LOC1110239772.6e-11177.99Show/hide
Query:  MFHTRRSQKSKFHNSRRYHDNHHGQDPYTKELVGIRKNINDFNELCHEFKMRYEDMKSHAAKSVQKEEDRPMPQEDNHQQIPNERENQDGVEDTNVETVM
        MFHT RSQKSKFH+SRR +DNHHG DPYTKELVGIRKNIND NELC EFKM YEDM+ HA KSV+KE D PMPQE+NHQ IPNE ENQD V+DTNVETVM
Subjt:  MFHTRRSQKSKFHNSRRYHDNHHGQDPYTKELVGIRKNINDFNELCHEFKMRYEDMKSHAAKSVQKEEDRPMPQEDNHQQIPNERENQDGVEDTNVETVM

Query:  HAQQKDFNIDVIIYDAEEDLHLKVLMHDEYTTKEEALVAKAVEITNIVKIEDCKESNQLQNEDLGNTEKQHSLIALKPMENQIPWTHGPVYWGFKPGIWN
        HA+Q+DFNIDV+IYDAEED+H++VL  DEYTT EE L+ KA+EITNIV++ + K+S QLQN DLGNT+KQHSLIA  P++NQIPWT GPVYWGFKP IW 
Subjt:  HAQQKDFNIDVIIYDAEEDLHLKVLMHDEYTTKEEALVAKAVEITNIVKIEDCKESNQLQNEDLGNTEKQHSLIALKPMENQIPWTHGPVYWGFKPGIWN

Query:  KTARFLFTTSNYKFIIQIYYPINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQG
        KTARF FT SNYKFIIQIYY IN+FERAQD EYKVAL+GDP+DSRTNPS+ GEDDMNQG
Subjt:  KTARFLFTTSNYKFIIQIYYPINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQG

A0A6J1DYP6 uncharacterized protein LOC1110247371.5e-1059.09Show/hide
Query:  PINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQ
        P  + ER  D  YK+ L GD  DSRTNPS+  EDD+NQG+   MP G ITRSR++KLQQALL  VQ
Subjt:  PINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQ

A0A6J1DYV9 uncharacterized protein LOC1110255392.7e-0756.06Show/hide
Query:  YKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKED
        Y     GD  DSRTNPSK GEDDMNQ A   +P G ITRSRA++LQ A    +QA V+ST   +ED
Subjt:  YKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCACACTAGACGTTCACAGAAATCGAAGTTCCACAATAGTCGCAGATATCATGATAACCACCATGGCCAAGATCCATATACGAAGGAATTGGTCGGGATTCGCAA
AAACATAAATGACTTCAATGAATTGTGCCACGAGTTCAAAATGCGATACGAAGACATGAAGAGTCATGCTGCAAAATCGGTTCAAAAAGAGGAAGATCGTCCTATGCCTC
AAGAGGATAATCATCAACAAATTCCAAATGAGAGAGAGAATCAAGATGGCGTTGAAGATACGAATGTTGAGACTGTTATGCATGCCCAACAAAAAGATTTTAATATTGAT
GTTATTATTTATGATGCTGAAGAAGATTTGCATCTTAAGGTTTTGATGCATGATGAGTATACAACCAAAGAGGAGGCACTTGTTGCAAAAGCGGTCGAGATTACAAATAT
TGTGAAAATCGAGGATTGTAAGGAAAGCAACCAACTGCAAAATGAGGACCTTGGCAACACTGAGAAACAACATTCACTCATTGCTTTGAAGCCCATGGAGAATCAAATAC
CATGGACTCATGGTCCAGTGTATTGGGGATTTAAACCAGGAATTTGGAACAAGACTGCAAGGTTTTTATTTACTACAAGCAATTACAAGTTTATCATACAAATTTATTAT
CCTATCAACATCTTTGAACGAGCTCAAGATGTTGAGTACAAGGTTGCATTGCGAGGAGATCCTTTAGATTCGAGGACGAATCCTTCTAAAGCAGGGGAGGATGATATGAA
CCAAGGAGCTCCCTTTGACATGCCTCATGGACTGATTACAAGATCAAGAGCTCGGAAACTTCAACAAGCCTTACTACTTCGTGTCCAAGCGTTCGTAAACTCGACACGAG
AATTAAAGGAAGATGTGCAAGATGTTGGAACAATTCACTACAATTTGGGGCATGTTATGCATTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCACACTAGACGTTCACAGAAATCGAAGTTCCACAATAGTCGCAGATATCATGATAACCACCATGGCCAAGATCCATATACGAAGGAATTGGTCGGGATTCGCAA
AAACATAAATGACTTCAATGAATTGTGCCACGAGTTCAAAATGCGATACGAAGACATGAAGAGTCATGCTGCAAAATCGGTTCAAAAAGAGGAAGATCGTCCTATGCCTC
AAGAGGATAATCATCAACAAATTCCAAATGAGAGAGAGAATCAAGATGGCGTTGAAGATACGAATGTTGAGACTGTTATGCATGCCCAACAAAAAGATTTTAATATTGAT
GTTATTATTTATGATGCTGAAGAAGATTTGCATCTTAAGGTTTTGATGCATGATGAGTATACAACCAAAGAGGAGGCACTTGTTGCAAAAGCGGTCGAGATTACAAATAT
TGTGAAAATCGAGGATTGTAAGGAAAGCAACCAACTGCAAAATGAGGACCTTGGCAACACTGAGAAACAACATTCACTCATTGCTTTGAAGCCCATGGAGAATCAAATAC
CATGGACTCATGGTCCAGTGTATTGGGGATTTAAACCAGGAATTTGGAACAAGACTGCAAGGTTTTTATTTACTACAAGCAATTACAAGTTTATCATACAAATTTATTAT
CCTATCAACATCTTTGAACGAGCTCAAGATGTTGAGTACAAGGTTGCATTGCGAGGAGATCCTTTAGATTCGAGGACGAATCCTTCTAAAGCAGGGGAGGATGATATGAA
CCAAGGAGCTCCCTTTGACATGCCTCATGGACTGATTACAAGATCAAGAGCTCGGAAACTTCAACAAGCCTTACTACTTCGTGTCCAAGCGTTCGTAAACTCGACACGAG
AATTAAAGGAAGATGTGCAAGATGTTGGAACAATTCACTACAATTTGGGGCATGTTATGCATTTCTAA
Protein sequenceShow/hide protein sequence
MFHTRRSQKSKFHNSRRYHDNHHGQDPYTKELVGIRKNINDFNELCHEFKMRYEDMKSHAAKSVQKEEDRPMPQEDNHQQIPNERENQDGVEDTNVETVMHAQQKDFNID
VIIYDAEEDLHLKVLMHDEYTTKEEALVAKAVEITNIVKIEDCKESNQLQNEDLGNTEKQHSLIALKPMENQIPWTHGPVYWGFKPGIWNKTARFLFTTSNYKFIIQIYY
PINIFERAQDVEYKVALRGDPLDSRTNPSKAGEDDMNQGAPFDMPHGLITRSRARKLQQALLLRVQAFVNSTRELKEDVQDVGTIHYNLGHVMHF