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Moc02g18530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g18530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr2:13833474..13838391
RNA-Seq ExpressionMoc02g18530
SyntenyMoc02g18530
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-3361.7Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEK-------ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FE+LATRAHDMELSIANRG+ D LVL + KE K V+        A  E+  V+T   KL S+ K K   +Q   EKRR +LKERQEKVYPFP+SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEK-------ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        +P ML QL E +LI LLEC RP EMG+ NDP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-3360.28Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEELATRAHDMELSIA+RG+KDF V  ++K+ K        V+ ++ ES  VNTI  K S R +G+   K  G+EKRRL+LKERQEKVYPFP+SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
           ML+QL E +LI L EC RPE+ G  +DP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

TYK28163.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-3361.7Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEEL TRAHDMELSIA+RG+KDF V  +   +KE+KS EK    ++ ES  VNT   K S R +G+   K  G+E+RRL+LKERQEKVYPFP SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        I  ML+QL E +LI L EC RPE+ GK +DP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]8.7e-5485.19Show/hide
Query:  RIKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSDIPYMLK
        RIKPR FEELATRAHDMELSIANRGSKD LVL+LEKESKSVEK   E FGVNTISPKL S+IKGKRI KQ+GN K  LSLKERQEKVYPFPNSDIPYML+
Subjt:  RIKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSDIPYMLK

Query:  QLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        QL ETRLIVL ECIRPEEM K +DPKYCKYHRVIS
Subjt:  QLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.7e-3360.28Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEELATRAHDMELSIA+RG+KDFLV  ++K+ K        V+  L ES  VNT   K S   + +   K  G+E+RRL+LKERQEKVYPFP+SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        I  ML+QL E +LI L EC RPE+ GK +DP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein8.3e-3461.7Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEK-------ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FE+LATRAHDMELSIANRG+ D LVL + KE K V+        A  E+  V+T   KL S+ K K   +Q   EKRR +LKERQEKVYPFP+SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEK-------ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        +P ML QL E +LI LLEC RP EMG+ NDP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

A0A5A7STA5 Ty3-gypsy retrotransposon protein7.0e-3360.28Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEELATRAHDMELSIA+RG+K+F V  +   +KE+KS EK    ++ ES  VNT   K S R +G+   K  G+E+RRL+LKERQ+KVYPFP SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        I  ML+QL E +LI L EC RPE+ GK +DP YCKYH+VIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

A0A5D3C0W6 Ty3-gypsy retrotransposon protein4.8e-3460.28Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEELATRAHDMELSIA+RG+KDF V  ++K+ K        V+ ++ ES  VNTI  K S R +G+   K  G+EKRRL+LKERQEKVYPFP+SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKS-------VEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
           ML+QL E +LI L EC RPE+ G  +DP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

A0A5D3DWV0 Ty3-gypsy retrotransposon protein6.3e-3461.7Show/hide
Query:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD
        IKPR FEEL TRAHDMELSIA+RG+KDF V  +   +KE+KS EK    ++ ES  VNT   K S R +G+   K  G+E+RRL+LKERQEKVYPFP SD
Subjt:  IKPRIFEELATRAHDMELSIANRGSKDFLVLNL---EKESKSVEK----ALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSD

Query:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        I  ML+QL E +LI L EC RPE+ GK +DP YCKYHRVIS
Subjt:  IPYMLKQLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

A0A6J1DYQ8 uncharacterized protein LOC1110258344.2e-5485.19Show/hide
Query:  RIKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSDIPYMLK
        RIKPR FEELATRAHDMELSIANRGSKD LVL+LEKESKSVEK   E FGVNTISPKL S+IKGKRI KQ+GN K  LSLKERQEKVYPFPNSDIPYML+
Subjt:  RIKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSDIPYMLK

Query:  QLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS
        QL ETRLIVL ECIRPEEM K +DPKYCKYHRVIS
Subjt:  QLQETRLIVLLECIRPEEMGKGNDPKYCKYHRVIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAAACCCCCTTCAAATCTTGAATCCCTTTATGTGGTTGAACTTAAGCCTTCGTATTTGAACCCCTCGGAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGT
GTTTCCGGCATCGAGTATAGTGAGTCATCTGTCTGCTCAAGGTCACGACTGCAAAGATCTAGTGGGGTTGAGTAGAAACTATGCTGCTTTGCTAGAGGGAAGTCGTTGCA
AACGCCTGCAGCTTTGGTTGTTGCCAATGGAAAGGTTGAACGCAAGAGGAAGTGGAGAGGTTACCTACGCTGGAGTTTCGCCGCTGTTGCATTCCGCTGCTGCCGAAGAG
GGAGTTGCGCCACTCTTTTGCGAATGCCGTATAAAACCTCGCATCTTTGAAGAGCTGGCAACTCGTGCTCATGATATGGAGCTAAGCATTGCTAATCGAGGAAGTAAGGA
TTTCTTAGTGCTGAACTTAGAGAAAGAAAGTAAAAGTGTTGAGAAAGCTTTAGGTGAATCTTTTGGTGTAAACACAATCTCTCCCAAGTTGTCTTCAAGAATAAAAGGAA
AGAGAATTGGGAAGCAACAAGGAAATGAGAAAAGACGGCTAAGCTTGAAAGAAAGGCAAGAAAAAGTCTATCCTTTTCCTAATTCTGACATCCCTTATATGTTGAAACAA
TTACAGGAAACACGATTAATTGTACTTCTAGAGTGTATACGACCAGAAGAAATGGGTAAAGGCAATGATCCCAAATATTGCAAGTACCACCGAGTTATTAGCATCCAGTG
GAAAAGTGTTTTGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAAACCCCCTTCAAATCTTGAATCCCTTTATGTGGTTGAACTTAAGCCTTCGTATTTGAACCCCTCGGAGCATGCTTGTTTGATTGGTCATCAAACTCGTGGAGT
GTTTCCGGCATCGAGTATAGTGAGTCATCTGTCTGCTCAAGGTCACGACTGCAAAGATCTAGTGGGGTTGAGTAGAAACTATGCTGCTTTGCTAGAGGGAAGTCGTTGCA
AACGCCTGCAGCTTTGGTTGTTGCCAATGGAAAGGTTGAACGCAAGAGGAAGTGGAGAGGTTACCTACGCTGGAGTTTCGCCGCTGTTGCATTCCGCTGCTGCCGAAGAG
GGAGTTGCGCCACTCTTTTGCGAATGCCGTATAAAACCTCGCATCTTTGAAGAGCTGGCAACTCGTGCTCATGATATGGAGCTAAGCATTGCTAATCGAGGAAGTAAGGA
TTTCTTAGTGCTGAACTTAGAGAAAGAAAGTAAAAGTGTTGAGAAAGCTTTAGGTGAATCTTTTGGTGTAAACACAATCTCTCCCAAGTTGTCTTCAAGAATAAAAGGAA
AGAGAATTGGGAAGCAACAAGGAAATGAGAAAAGACGGCTAAGCTTGAAAGAAAGGCAAGAAAAAGTCTATCCTTTTCCTAATTCTGACATCCCTTATATGTTGAAACAA
TTACAGGAAACACGATTAATTGTACTTCTAGAGTGTATACGACCAGAAGAAATGGGTAAAGGCAATGATCCCAAATATTGCAAGTACCACCGAGTTATTAGCATCCAGTG
GAAAAGTGTTTTGTCTTAA
Protein sequenceShow/hide protein sequence
MCKPPSNLESLYVVELKPSYLNPSEHACLIGHQTRGVFPASSIVSHLSAQGHDCKDLVGLSRNYAALLEGSRCKRLQLWLLPMERLNARGSGEVTYAGVSPLLHSAAAEE
GVAPLFCECRIKPRIFEELATRAHDMELSIANRGSKDFLVLNLEKESKSVEKALGESFGVNTISPKLSSRIKGKRIGKQQGNEKRRLSLKERQEKVYPFPNSDIPYMLKQ
LQETRLIVLLECIRPEEMGKGNDPKYCKYHRVISIQWKSVLS