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Moc02g19030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g19030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:14153389..14154201
RNA-Seq ExpressionMoc02g19030
SyntenyMoc02g19030
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]6.0e-4237.55Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVK---IESVGKNLFLCKFKTVRDKSKILNNG
        MA   L  + +  KLT EE     D+    +E   K  + SL+CKLL+ ++I   V KN +   W  ++ K   ++ +G N+FL  F    D+++IL  G
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVK---IESVGKNLFLCKFKTVRDKSKILNNG

Query:  PSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYER
        P  FD+++++++ P +     ++++R  S W+HF +L  AC ++  A  LGN +G FE ++S+ +  CWG  LRVR   DV K L RG+ + +       
Subjt:  PSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYER

Query:  WIPITYEKLPDFCYGCGRLGHVIKDCE--TNDDEGDELQYGAWLR
        WIPI YE+LPDF Y CGRL H++KDC     D     LQYG WLR
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCE--TNDDEGDELQYGAWLR

XP_022143536.1 uncharacterized protein LOC111013413 [Momordica charantia]1.4e-62100Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF
        MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF

Query:  FDKSMVMLEEPRANCNFNELEY
        FDKSMVMLEEPRANCNFNELEY
Subjt:  FDKSMVMLEEPRANCNFNELEY

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.9e-5689.31Show/hide
Query:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK
        MADELLS+ VERLKLTKEEK        GEIFDMGEDEIEDYDKQAQFSLVCKLLT KNIPGEVFKNMMPRIW NVNVKIESVGKNLFLCKFKTVRDKSK
Subjt:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK

Query:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR
        ILNNGP FFDKSMVMLEEPRANCNFNELE+R
Subjt:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.9e-5689.31Show/hide
Query:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK
        MADELLS+ VERLKLTKEEK        GEIFDMGEDEIEDYDKQAQFSLVCKLLT KNIPGEVFKNMMPRIW NVNVKIESVGKNLFLCKFKTVRDKSK
Subjt:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK

Query:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR
        ILNNGP FFDKSMVMLEEPRANCNFNELE+R
Subjt:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.9e-4337.86Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPS
        M  E L    ++ KLT EE     D+  D ++  ++   +SLV KLL  + I  +V   ++   W V   + +ES+GKNLFL  F    D ++++  GP 
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPS

Query:  FFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWI
        FFDK++++L++P ++ N +ELE+   +FWIH  +LP +  ++  AI LGN +G F  +D +E G  WG +LR+R  ID++K LRRG+ I I       WI
Subjt:  FFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWI

Query:  PITYEKLPDFCYGCGRLGHVIKDCE-----TNDDEGDELQYGAWLR-----SGQNQPRKGNRSEGRREDFRGRGRGGSRK
        PI YE+LPDFCY CG +GH   DC+       DD     +YG WLR     +G  + RKG      RED  G     S++
Subjt:  PITYEKLPDFCYGCGRLGHVIKDCE-----TNDDEGDELQYGAWLR-----SGQNQPRKGNRSEGRREDFRGRGRGGSRK

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054812.9e-4237.55Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVK---IESVGKNLFLCKFKTVRDKSKILNNG
        MA   L  + +  KLT EE     D+    +E   K  + SL+CKLL+ ++I   V KN +   W  ++ K   ++ +G N+FL  F    D+++IL  G
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVK---IESVGKNLFLCKFKTVRDKSKILNNG

Query:  PSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYER
        P  FD+++++++ P +     ++++R  S W+HF +L  AC ++  A  LGN +G FE ++S+ +  CWG  LRVR   DV K L RG+ + +       
Subjt:  PSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYER

Query:  WIPITYEKLPDFCYGCGRLGHVIKDCE--TNDDEGDELQYGAWLR
        WIPI YE+LPDF Y CGRL H++KDC     D     LQYG WLR
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCE--TNDDEGDELQYGAWLR

A0A6J1CQJ5 uncharacterized protein LOC1110134136.7e-63100Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF
        MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSF

Query:  FDKSMVMLEEPRANCNFNELEY
        FDKSMVMLEEPRANCNFNELEY
Subjt:  FDKSMVMLEEPRANCNFNELEY

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X19.3e-5789.31Show/hide
Query:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK
        MADELLS+ VERLKLTKEEK        GEIFDMGEDEIEDYDKQAQFSLVCKLLT KNIPGEVFKNMMPRIW NVNVKIESVGKNLFLCKFKTVRDKSK
Subjt:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK

Query:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR
        ILNNGP FFDKSMVMLEEPRANCNFNELE+R
Subjt:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X29.3e-5789.31Show/hide
Query:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK
        MADELLS+ VERLKLTKEEK        GEIFDMGEDEIEDYDKQAQFSLVCKLLT KNIPGEVFKNMMPRIW NVNVKIESVGKNLFLCKFKTVRDKSK
Subjt:  MADELLSRQVERLKLTKEEK--------GEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSK

Query:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR
        ILNNGP FFDKSMVMLEEPRANCNFNELE+R
Subjt:  ILNNGPSFFDKSMVMLEEPRANCNFNELEYR

A0A6J1DU55 uncharacterized protein LOC1110231359.1e-4437.86Show/hide
Query:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPS
        M  E L    ++ KLT EE     D+  D ++  ++   +SLV KLL  + I  +V   ++   W V   + +ES+GKNLFL  F    D ++++  GP 
Subjt:  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW-VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPS

Query:  FFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWI
        FFDK++++L++P ++ N +ELE+   +FWIH  +LP +  ++  AI LGN +G F  +D +E G  WG +LR+R  ID++K LRRG+ I I       WI
Subjt:  FFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWI

Query:  PITYEKLPDFCYGCGRLGHVIKDCE-----TNDDEGDELQYGAWLR-----SGQNQPRKGNRSEGRREDFRGRGRGGSRK
        PI YE+LPDFCY CG +GH   DC+       DD     +YG WLR     +G  + RKG      RED  G     S++
Subjt:  PITYEKLPDFCYGCGRLGHVIKDCE-----TNDDEGDELQYGAWLR-----SGQNQPRKGNRSEGRREDFRGRGRGGSRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding5.7e-0623.49Show/hide
Query:  NVKIESVGKNLFLCK----FKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGK
        NV  E VG+ L + K    F++      IL  GP  F+  M +++  R     ++ E++   FWI    +P    + +   ++G  +G F          
Subjt:  NVKIESVGKNLFLCK----FKTVRDKSKILNNGPSFFDKSMVMLEEPRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGK

Query:  CWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWIPITYEKLPDFCYGCGRLGHVIKDCETNDDEG
                     +  +L R V +          +   YEKL +FC  CG L H   +C T+ ++G
Subjt:  CWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWIPITYEKLPDFCYGCGRLGHVIKDCETNDDEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATGAGTTGTTGAGTCGACAGGTGGAAAGACTGAAATTGACTAAAGAGGAGAAGGGGGAAATTTTTGATATGGGTGAAGATGAAATTGAGGACTATGATAAACA
AGCTCAATTCTCACTGGTCTGCAAACTCCTAACATGGAAGAATATCCCTGGTGAGGTCTTCAAGAACATGATGCCTAGGATCTGGGTTAATGTAAATGTGAAAATTGAGT
CAGTAGGGAAGAATCTGTTTCTCTGCAAATTCAAGACTGTTCGAGATAAAAGCAAAATTCTCAACAATGGACCATCGTTTTTTGATAAGTCTATGGTAATGTTGGAGGAA
CCTAGAGCAAACTGCAATTTCAACGAGCTGGAATACAGGTATGCATCTTTTTGGATACATTTCCATGAACTACCATTTGCTTGTTTCTCTAGGAAGACAGCTATAGCTTT
AGGAAATCTGGTAGGGAAATTTGAAAAGCTAGATTCCGATGAGGACGGGAAATGCTGGGGAAAAACTCTTAGAGTTAGATCTCATATTGATGTTAGCAAATCCTTACGTA
GAGGAGTAATGATAAAGATCGGTGCGATGGCATATGAAAGATGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTGGTAGACTTGGCCATGTGATA
AAGGACTGTGAAACCAATGATGATGAAGGTGATGAACTACAATATGGTGCCTGGTTAAGATCGGGACAAAATCAGCCACGAAAAGGCAATAGATCAGAAGGACGTAGAGA
AGATTTTCGAGGCAGAGGCCGTGGAGGTAGTAGGAAATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATGAGTTGTTGAGTCGACAGGTGGAAAGACTGAAATTGACTAAAGAGGAGAAGGGGGAAATTTTTGATATGGGTGAAGATGAAATTGAGGACTATGATAAACA
AGCTCAATTCTCACTGGTCTGCAAACTCCTAACATGGAAGAATATCCCTGGTGAGGTCTTCAAGAACATGATGCCTAGGATCTGGGTTAATGTAAATGTGAAAATTGAGT
CAGTAGGGAAGAATCTGTTTCTCTGCAAATTCAAGACTGTTCGAGATAAAAGCAAAATTCTCAACAATGGACCATCGTTTTTTGATAAGTCTATGGTAATGTTGGAGGAA
CCTAGAGCAAACTGCAATTTCAACGAGCTGGAATACAGGTATGCATCTTTTTGGATACATTTCCATGAACTACCATTTGCTTGTTTCTCTAGGAAGACAGCTATAGCTTT
AGGAAATCTGGTAGGGAAATTTGAAAAGCTAGATTCCGATGAGGACGGGAAATGCTGGGGAAAAACTCTTAGAGTTAGATCTCATATTGATGTTAGCAAATCCTTACGTA
GAGGAGTAATGATAAAGATCGGTGCGATGGCATATGAAAGATGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTGGTAGACTTGGCCATGTGATA
AAGGACTGTGAAACCAATGATGATGAAGGTGATGAACTACAATATGGTGCCTGGTTAAGATCGGGACAAAATCAGCCACGAAAAGGCAATAGATCAGAAGGACGTAGAGA
AGATTTTCGAGGCAGAGGCCGTGGAGGTAGTAGGAAATACTAG
Protein sequenceShow/hide protein sequence
MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIWVNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEE
PRANCNFNELEYRYASFWIHFHELPFACFSRKTAIALGNLVGKFEKLDSDEDGKCWGKTLRVRSHIDVSKSLRRGVMIKIGAMAYERWIPITYEKLPDFCYGCGRLGHVI
KDCETNDDEGDELQYGAWLRSGQNQPRKGNRSEGRREDFRGRGRGGSRKY