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Moc02g20040 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g20040
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr2:14870244..14871955
RNA-Seq ExpressionMoc02g20040
SyntenyMoc02g20040
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.2e-3388.51Show/hide
Query:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        V +DL+FVLQEDCPQA APNATVAV  AYDRWIKAN+KAKVYILASISDVLAKKHEDT+TA EIMDSLQ+MFGQPSSQARHEALKFI
Subjt:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

XP_022154837.1 uncharacterized protein LOC111022000 [Momordica charantia]3.7e-3590.59Show/hide
Query:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        +DLRFVLQEDCPQAPAPNAT+AV NAYDRWIKAN+KAKVYIL+SISDVLAKKHEDTVTA EIMDSLQ+MFGQPSSQARHEALKF+
Subjt:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

XP_022156751.1 uncharacterized protein LOC111023591 [Momordica charantia]4.9e-2766.34Show/hide
Query:  KVFAWFNIEVNGDSVHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKF
        K +  +   +N   V +DLRFVL E CPQAP  NA  A  +AYDRWIKAN+KAK+YILA+IS+VLAKKH+  VTA EIMDSLQ+MFGQPS QARH+ALKF
Subjt:  KVFAWFNIEVNGDSVHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKF

Query:  I
        I
Subjt:  I

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]1.6e-3084.71Show/hide
Query:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        +DLRFVLQEDCPQAPAPNATVAV N YDRWIKAN+KAKV ILASISDVLAKKHE++V   EIMDSLQ+MFGQPSSQARHEAL  I
Subjt:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]4.6e-3386.21Show/hide
Query:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        V +DLRFVLQEDCPQAP  NATVAV NAYDRWIK+N+KAKVYILASISDVLAKKHEDTVT  EIMDSLQ+MFGQPS QARHEALKF+
Subjt:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

TrEMBL top hitse value%identityAlignment
A0A6J1DFZ2 uncharacterized protein LOC1110200955.8e-3488.51Show/hide
Query:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        V +DL+FVLQEDCPQA APNATVAV  AYDRWIKAN+KAKVYILASISDVLAKKHEDT+TA EIMDSLQ+MFGQPSSQARHEALKFI
Subjt:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

A0A6J1DMS3 uncharacterized protein LOC1110220001.8e-3590.59Show/hide
Query:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        +DLRFVLQEDCPQAPAPNAT+AV NAYDRWIKAN+KAKVYIL+SISDVLAKKHEDTVTA EIMDSLQ+MFGQPSSQARHEALKF+
Subjt:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

A0A6J1DVX8 uncharacterized protein LOC1110235912.4e-2766.34Show/hide
Query:  KVFAWFNIEVNGDSVHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKF
        K +  +   +N   V +DLRFVL E CPQAP  NA  A  +AYDRWIKAN+KAK+YILA+IS+VLAKKH+  VTA EIMDSLQ+MFGQPS QARH+ALKF
Subjt:  KVFAWFNIEVNGDSVHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKF

Query:  I
        I
Subjt:  I

A0A6J1DW68 uncharacterized protein LOC1110246377.9e-3184.71Show/hide
Query:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        +DLRFVLQEDCPQAPAPNATVAV N YDRWIKAN+KAKV ILASISDVLAKKHE++V   EIMDSLQ+MFGQPSSQARHEAL  I
Subjt:  NDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

A0A6J1DWL0 uncharacterized protein LOC1110247342.2e-3386.21Show/hide
Query:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI
        V +DLRFVLQEDCPQAP  NATVAV NAYDRWIK+N+KAKVYILASISDVLAKKHEDTVT  EIMDSLQ+MFGQPS QARHEALKF+
Subjt:  VHNDLRFVLQEDCPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATCACCCATTTCCAACTCTTTTGACTGACCAAATCGTGCTCAAACTGATAGTGGAACACTTCTTCTACACGTATGCATCGGTTGGAACCACCAAAACGCATTG
GAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCTTCCCAGGCGCCTGGCGCCTCCCATGTAGATTCACGCTGTGAGTTCCATGCTCGGC
CTCGTGTCGCCCTGGGCGCGGCCTCCCTACAGAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATAGTGTTCATAATGATCTTAGGTTCGTCTTACAAGAGGAT
TGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCTCAACGCCTATGACAGGTGGATCAAGGCCAATAACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGA
TGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAACGAGATCATGGACTCGCTGCAGAACATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGT
TCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATCACCCATTTCCAACTCTTTTGACTGACCAAATCGTGCTCAAACTGATAGTGGAACACTTCTTCTACACGTATGCATCGGTTGGAACCACCAAAACGCATTG
GAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCTTCCCAGGCGCCTGGCGCCTCCCATGTAGATTCACGCTGTGAGTTCCATGCTCGGC
CTCGTGTCGCCCTGGGCGCGGCCTCCCTACAGAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATAGTGTTCATAATGATCTTAGGTTCGTCTTACAAGAGGAT
TGTCCTCAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCTCAACGCCTATGACAGGTGGATCAAGGCCAATAACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGA
TGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAACGAGATCATGGACTCGCTGCAGAACATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGT
TCATTTAA
Protein sequenceShow/hide protein sequence
MVNHPFPTLLTDQIVLKLIVEHFFYTYASVGTTKTHWKTRFIKGKVGRKPVFLQASQAPGASHVDSRCEFHARPRVALGAASLQKVFAWFNIEVNGDSVHNDLRFVLQED
CPQAPAPNATVAVLNAYDRWIKANNKAKVYILASISDVLAKKHEDTVTANEIMDSLQNMFGQPSSQARHEALKFI