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Moc02g25430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc02g25430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr2:18147661..18148091
RNA-Seq ExpressionMoc02g25430
SyntenyMoc02g25430
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6138334.1 hypothetical protein GIB67_033136 [Kingdonia uniflora]2.4e-3083.52Show/hide
Query:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        +ENVTELV  TL DG+EEGRRFSNEEKDPMTSKELN+EPYEVKIS        LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

KAG9438403.1 hypothetical protein H6P81_021658 [Aristolochia fimbriata]3.1e-3082.42Show/hide
Query:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        +ENVTEL   TLRDG+EEGRRFSNEEKDP+TSKELN+EPYEVKIS        LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]1.3e-3361.54Show/hide
Query:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------
        MNENVTELVP TLRDGMEEGRRFSNEEKDPMTSKELN+EPYEVKISCTVLSSG                                               
Subjt:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------

Query:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]9.6e-3260.14Show/hide
Query:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------
        MNENVT+LVP TLRDGMEEGRRFSNEEKDPMTSKELN+EPYEVKIS TVLSSG                                               
Subjt:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------

Query:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.0e-2958.74Show/hide
Query:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------
        MNENVTELV  TLRDGMEEGRRFSNEEKDPMTSKELN+EPYEVKIS TVLSSG                                               
Subjt:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------

Query:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
            +LVRG RVKDLP VRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3PCQ6 30S ribosomal protein S12, chloroplastic4.8e-2957.97Show/hide
Query:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------I
        +ENVTELV  TLRDG+EEGRRFSNEEKDP+TSKELN+EPYEVKISCT  S G                                               +
Subjt:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------I

Query:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

A0A443Q433 30S ribosomal protein S12, chloroplastic2.8e-2957.86Show/hide
Query:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVL-------------------------------------------------SS
        +ENVTELV  TLRDG+EEGRRFSNEEKDP+TSKELN+EPYEVKISCTVL                                                  S
Subjt:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVL-------------------------------------------------SS

Query:  GILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
         +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  GILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383946.5e-3461.54Show/hide
Query:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------
        MNENVTELVP TLRDGMEEGRRFSNEEKDPMTSKELN+EPYEVKISCTVLSSG                                               
Subjt:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSG-----------------------------------------------

Query:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
            +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  ----ILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

A0A7J7LK53 Uncharacterized protein1.1e-3083.52Show/hide
Query:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        +ENVTELV  TL DG+EEGRRFSNEEKDPMTSKELN+EPYEVKIS        LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  NENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

A0A7N2N888 Uncharacterized protein2.8e-2969.91Show/hide
Query:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISC--TVLSSG-------------------ILVRGGRVKDLPGVRYHIVRGTLDAV
        MNENVTE V  TLR G+EEGRRFSNEEKDP TSKELN+EPYEVKIS     L+SG                   +LVRGGRVKDLPGVRYHIVRGTLDAV
Subjt:  MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISC--TVLSSG-------------------ILVRGGRVKDLPGVRYHIVRGTLDAV

Query:  GVKDCQQGRSSAL
        GVKD QQGRSSAL
Subjt:  GVKDCQQGRSSAL

SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic1.3e-1292.11Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

P30060 Plastid 30S ribosomal protein S127.9e-1389.47Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +LVRGGRVKDLPGVRYHI+RGTLDAVGVKD QQGRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

Q0G9J5 30S ribosomal protein S12, chloroplastic5.5e-1492.68Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic5.5e-1492.68Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic5.5e-1492.68Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRSSAL
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein3.3e-0652.63Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +L+RGGRVKD PGV+ H +RG  D +G+   ++GRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

ATCG00065.1 ribosomal protein S12A9.6e-1492.11Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

ATCG00905.1 ribosomal protein S12C9.6e-1492.11Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

ATCG01230.1 ribosomal protein S12B9.6e-1492.11Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +LVRGGRVKDLPGVRYHIVRGTLDAVGVKD QQGRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS

ATMG00980.1 Ribosomal protein S12/S23 family protein3.3e-0652.63Show/hide
Query:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS
        S +L+RGGRVKD PGV+ H +RG  D +G+   ++GRS
Subjt:  SGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGACACTCTTCGGGACGGAATGGAAGAAGGTAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CAAGGAGCCGTATGAGGTGAAAATCTCATGTACAGTTCTGTCCAGTGGCATCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAG
GAACCCTAGATGCTGTCGGAGTAAAGGATTGTCAACAAGGGCGTTCTAGTGCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGACACTCTTCGGGACGGAATGGAAGAAGGTAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CAAGGAGCCGTATGAGGTGAAAATCTCATGTACAGTTCTGTCCAGTGGCATCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAG
GAACCCTAGATGCTGTCGGAGTAAAGGATTGTCAACAAGGGCGTTCTAGTGCGTTGTAG
Protein sequenceShow/hide protein sequence
MNENVTELVPDTLRDGMEEGRRFSNEEKDPMTSKELNKEPYEVKISCTVLSSGILVRGGRVKDLPGVRYHIVRGTLDAVGVKDCQQGRSSAL