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Moc03g00730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g00730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:514987..516726
RNA-Seq ExpressionMoc03g00730
SyntenyMoc03g00730
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74160.1 hypothetical protein VITISV_018405 [Vitis vinifera]5.9e-0737Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTL-----VAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG
        +G+  QL G+++K +EEV+ + LL +LPD  E    S       V + +G +K    G + R  S+   +    VEC+YCH KGHIK +CR+ K D++ G
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTL-----VAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG

GEW69234.1 hypothetical protein [Tanacetum cinerariifolium]6.6e-0635.65Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTLVAQNKG-----KAKMSYNGKQQRRYSRGSGSSS-----GEVECYYCHKKGHIKCFCRKFKE
        +G+  QL GM +K ++E++ + LL +LP+  E    S   +   G      AK S   ++ RR S+GS S S      +VECY+CHKKGH   FCR+ K+
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTLVAQNKG-----KAKMSYNGKQQRRYSRGSGSSS-----GEVECYYCHKKGHIKCFCRKFKE

Query:  DLENGNTIANVTMHK
        + +  N       HK
Subjt:  DLENGNTIANVTMHK

RVW24670.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.2e-0834.75Show/hide
Query:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDRVEN--------DLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHK
        K Q G          +G+  QL GM++K +EEV+ + LL +LPD  E           +  LV + KG++K    G + R  S+   +    VEC+YCH 
Subjt:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDRVEN--------DLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHK

Query:  KGHIKCFCRKFKEDLENG
        KGHI+ +CR+ K D++ G
Subjt:  KGHIKCFCRKFKEDLENG

RVW24680.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.9e-0632.77Show/hide
Query:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDR---------VENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCH
        K Q G          +G+  QL GM++K +EEV+ + LL     R           +   S LV + +G++K    G + R  S+   +    VEC+YCH
Subjt:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDR---------VENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCH

Query:  KKGHIKCFCRKFKEDLENG
         KGHIK +CR+ K D++ G
Subjt:  KKGHIKCFCRKFKEDLENG

RVW31737.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.3e-0637Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPD-----RVENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG
        +G+  QL G+++K +EEV+ + LL +L D     R      S  V + +GK+K    G + R  S+   +    VEC+YCH KGHIK +CR+ K D++ G
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPD-----RVENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG

TrEMBL top hitse value%identityAlignment
A0A438CN81 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-0834.75Show/hide
Query:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDRVEN--------DLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHK
        K Q G          +G+  QL GM++K +EEV+ + LL +LPD  E           +  LV + KG++K    G + R  S+   +    VEC+YCH 
Subjt:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDRVEN--------DLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHK

Query:  KGHIKCFCRKFKEDLENG
        KGHI+ +CR+ K D++ G
Subjt:  KGHIKCFCRKFKEDLENG

A0A438CN91 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0632.77Show/hide
Query:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDR---------VENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCH
        K Q G          +G+  QL GM++K +EEV+ + LL     R           +   S LV + +G++K    G + R  S+   +    VEC+YCH
Subjt:  KMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDR---------VENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCH

Query:  KKGHIKCFCRKFKEDLENG
         KGHIK +CR+ K D++ G
Subjt:  KKGHIKCFCRKFKEDLENG

A0A438D8F1 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-0737Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPD-----RVENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG
        +G+  QL G+++K +EEV+ + LL +L D     R      S  V + +GK+K    G + R  S+   +    VEC+YCH KGHIK +CR+ K D++ G
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPD-----RVENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG

A0A438IG36 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-0633.01Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVE--------NDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDL
        +G+  QL  M++K ++EV+ + LL +LPD  E        + L+  LV + + ++K    G + +  S+   +    VEC+YCH KGHI+ +CR+ K D+
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVE--------NDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDL

Query:  ENG
        + G
Subjt:  ENG

A5B4R8 Integrase catalytic domain-containing protein2.9e-0737Show/hide
Query:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTL-----VAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG
        +G+  QL G+++K +EEV+ + LL +LPD  E    S       V + +G +K    G + R  S+   +    VEC+YCH KGHIK +CR+ K D++ G
Subjt:  EGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTL-----VAQNKGKAKMSYNGKQQRRYSRGSGSSSGEVECYYCHKKGHIKCFCRKFKEDLENG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACAGATATCAAGCACACAATTATTATGAAGGGGTCCTCAAGTTCAATGGGGAGAATTTCAGTTTTTGGAAGATGCAGTCTGGTGGCGAAAGAGACTACAGCGA
AGGAGTTGTTGAAGGCCTTGCAAGGCAGTTAGAAGGGATGAGTGTCAAGATTAAAGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTGCCTGACAGGGTAGAAAACG
ATCTTGAATCAACTTTGGTAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTATAATGGGAAGCAGCAGCGGAGATATAGCAGGGGTAGTGGGAGTTCCAGTGGAGAAGTA
GAGTGTTATTACTGCCACAAGAAGGGACACATTAAATGCTTTTGCAGGAAGTTTAAAGAAGATCTTGAGAATGGGAACACTATTGCAAATGTTACTATGCACAAAGTAGC
TGCAGATGGTTCAGGGCGAGACCTTAGAGGACTAGCAGCATTGATGGCCAGAACAGATCAGAAGAATATGCTATCAGCTCAAATTAAACAACTTGGGTGGGAGCGCCAAG
TCATCAGGAGAATCTTCCTTCAGAGGTCGTTCGGTTCGATCGAGAAAGGAAGCGACGGGGACCACTTAGATCAAGTGGGAGTACGTGGCTATGTCTCTATGTCTCGGGGA
CAAGACCACGTAGAGCTGCCCAGTCTCGGGGCAGAGTCAGACGATGCTTGGGTAGGACCAAACAGTATTGATCAGTTTGTTGATGGAGGAGTCAGAACTGTGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACAGATATCAAGCACACAATTATTATGAAGGGGTCCTCAAGTTCAATGGGGAGAATTTCAGTTTTTGGAAGATGCAGTCTGGTGGCGAAAGAGACTACAGCGA
AGGAGTTGTTGAAGGCCTTGCAAGGCAGTTAGAAGGGATGAGTGTCAAGATTAAAGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTGCCTGACAGGGTAGAAAACG
ATCTTGAATCAACTTTGGTAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTATAATGGGAAGCAGCAGCGGAGATATAGCAGGGGTAGTGGGAGTTCCAGTGGAGAAGTA
GAGTGTTATTACTGCCACAAGAAGGGACACATTAAATGCTTTTGCAGGAAGTTTAAAGAAGATCTTGAGAATGGGAACACTATTGCAAATGTTACTATGCACAAAGTAGC
TGCAGATGGTTCAGGGCGAGACCTTAGAGGACTAGCAGCATTGATGGCCAGAACAGATCAGAAGAATATGCTATCAGCTCAAATTAAACAACTTGGGTGGGAGCGCCAAG
TCATCAGGAGAATCTTCCTTCAGAGGTCGTTCGGTTCGATCGAGAAAGGAAGCGACGGGGACCACTTAGATCAAGTGGGAGTACGTGGCTATGTCTCTATGTCTCGGGGA
CAAGACCACGTAGAGCTGCCCAGTCTCGGGGCAGAGTCAGACGATGCTTGGGTAGGACCAAACAGTATTGATCAGTTTGTTGATGGAGGAGTCAGAACTGTGCCTTGA
Protein sequenceShow/hide protein sequence
MGDRYQAHNYYEGVLKFNGENFSFWKMQSGGERDYSEGVVEGLARQLEGMSVKIKEEVKAMRLLTSLPDRVENDLESTLVAQNKGKAKMSYNGKQQRRYSRGSGSSSGEV
ECYYCHKKGHIKCFCRKFKEDLENGNTIANVTMHKVAADGSGRDLRGLAALMARTDQKNMLSAQIKQLGWERQVIRRIFLQRSFGSIEKGSDGDHLDQVGVRGYVSMSRG
QDHVELPSLGAESDDAWVGPNSIDQFVDGGVRTVP