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Moc03g00840 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g00840
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:605833..608369
RNA-Seq ExpressionMoc03g00840
SyntenyMoc03g00840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019150530.1 PREDICTED: uncharacterized protein LOC109147323 [Ipomoea nil]1.6e-4758.29Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW TMV+D ++YA++C+ACQ HANFIHQPPEPLHPTVASWPF++WGLD+V PIT KS AG++YIL  TDYFS+                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
                    +TPYSLVYGVEA+LPLE +I SLR+A+ EGLT E+NAKLRL ELE LDEKRL AQQ+LECYQA
Subjt:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

XP_019161020.1 PREDICTED: uncharacterized protein LOC109157624 [Ipomoea nil]1.6e-4758.29Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW TMV+D ++YA++C+ACQ HANFIHQPPEPLHPTVASWPF++WGLD+V PIT KS AG++YIL  TDYFS+                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
                    +TPYSLVYGVEA+LPLE +I SLR+A+ EGLT E+NAKLRL ELE LDEKRL AQQ+LECYQA
Subjt:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

XP_019182110.1 PREDICTED: uncharacterized protein LOC109177249 [Ipomoea nil]1.6e-4758.29Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW TMV+D ++YA++C+ACQ HANFIHQPPEPLHPTVASWPF++WGLD+V PIT KS AG++YIL  TDYFS+                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
                    +TPYSLVYGVEA+LPLE +I SLR+A+ EGLT E+NAKLRL ELE LDEKRL AQQ+LECYQA
Subjt:  ------------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

XP_022151473.1 uncharacterized protein LOC111019405 [Momordica charantia]9.2e-4849Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFS----------------------------
        YW TMVQDSMEYAKKCEACQIHANF+HQPPEPLHPTVASWPFESWGLDLV PIT KS AG+SYIL  TDYFS                            
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFS----------------------------

Query:  -------------------------------------------------------------------------------------RATPYSLVYGVEAIL
                                                                                             R TPYSLVYGVEAIL
Subjt:  -------------------------------------------------------------------------------------RATPYSLVYGVEAIL

Query:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
        PLE EI SLRMA+LEGLTTEDNAKLRLQELE LDEKRLDAQQ LECYQA
Subjt:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

XP_022156952.1 uncharacterized protein K02A2.6-like [Momordica charantia]2.0e-4748.59Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW TMVQDSMEYAKKCEACQIHANF+H+PPEPLHPTVASWPFESWGLDLV PIT KS AG+SYIL  TDYFSR                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  --------------------------------------------------------------------------------------ATPYSLVYGVEAIL
                                                                                              ATPYSLVYGVEAIL
Subjt:  --------------------------------------------------------------------------------------ATPYSLVYGVEAIL

Query:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
        PLE EI SLRM +LEGLTTEDNAKLRLQELE LDEKRLDAQQ LECYQA
Subjt:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

TrEMBL top hitse value%identityAlignment
A0A2N9FBA0 RNase H domain-containing protein7.6e-4865.36Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR-----------------ATPYSLVYGV
        YW T+V+D M+YA  CEACQ+HAN+IHQPPEPLHPTVASWPF++WGLD+V P+  KS AG+ YIL  TDYFS+                 ATPYSLVYGV
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR-----------------ATPYSLVYGV

Query:  EAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
        EA+LPLE +I SLR+A+ EGLT E+NA+LRL+ELE LDEKRL+AQQ LECYQA
Subjt:  EAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

A0A5A7UVX7 Uncharacterized protein1.7e-4763.53Show/hide
Query:  MCNYWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR------------------------
        M  YW  MVQDSM+YA+KC+A Q HANFIHQP EPLHPTVASW FE+W LDLV  IT KSL G+SYILT TDYFS+                        
Subjt:  MCNYWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR------------------------

Query:  -------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
                TPYSLVYGVE +LPLE EI SLRMAM EGLTTEDN KL LQEL  LDEKRL+AQQALECYQA
Subjt:  -------ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

A0A5D3D189 Uncharacterized protein1.1e-4660.95Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW  +VQDS+ YAKKCE C+ HANFIHQPPEPLH TVASWPFE+WGLDLV PIT KS  G+SYIL  T YFS+                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  -ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA-LSQG
          TPYSLVYGV+ +LP E EI SLRMA+ EGLTTEDN KLRLQELE+LD++RL+AQQAL+C QA +S+G
Subjt:  -ATPYSLVYGVEAILPLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA-LSQG

A0A6J1DC95 Ribonuclease H4.4e-4849Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFS----------------------------
        YW TMVQDSMEYAKKCEACQIHANF+HQPPEPLHPTVASWPFESWGLDLV PIT KS AG+SYIL  TDYFS                            
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFS----------------------------

Query:  -------------------------------------------------------------------------------------RATPYSLVYGVEAIL
                                                                                             R TPYSLVYGVEAIL
Subjt:  -------------------------------------------------------------------------------------RATPYSLVYGVEAIL

Query:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
        PLE EI SLRMA+LEGLTTEDNAKLRLQELE LDEKRLDAQQ LECYQA
Subjt:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

A0A6J1DTB2 Ribonuclease H9.9e-4848.59Show/hide
Query:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------
        YW TMVQDSMEYAKKCEACQIHANF+H+PPEPLHPTVASWPFESWGLDLV PIT KS AG+SYIL  TDYFSR                           
Subjt:  YWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSR---------------------------

Query:  --------------------------------------------------------------------------------------ATPYSLVYGVEAIL
                                                                                              ATPYSLVYGVEAIL
Subjt:  --------------------------------------------------------------------------------------ATPYSLVYGVEAIL

Query:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA
        PLE EI SLRM +LEGLTTEDNAKLRLQELE LDEKRLDAQQ LECYQA
Subjt:  PLETEISSLRMAMLEGLTTEDNAKLRLQELEILDEKRLDAQQALECYQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAATTATTGGCTTACAATGGTTCAAGATTCTATGGAATACGCGAAGAAGTGTGAAGCTTGTCAGATTCACGCTAACTTCATACATCAGCCACCAGAACCT
CTACACCCCACCGTAGCCTCGTGGCCATTTGAATCTTGGGGACTCGACCTTGTCGTTCCTATAACGCTTAAATCTTTAGCTGGATATTCTTACATACTCACAGAG
ACTGATTATTTTTCAAGAGCTACGCCTTACTCTTTGGTTTATGGTGTAGAAGCTATCCTTCCACTAGAGACAGAAATTTCATCACTACGAATGGCTATGCTAGAA
GGTTTAACCACTGAGGACAATGCAAAATTACGCCTTCAGGAGTTAGAAATACTTGACGAGAAGAGGCTTGATGCGCAACAGGCATTGGAATGCTATCAGGCACTG
TCGCAGGGGATGCAGGGGAATGCCGGGGCGATAAGGGCCAAATCCGGATTCCGAATCCTGGTCCGAATTGTGGACTTGGGAGCGTTGTCTTTTCGGTTTGCCTGT
AAAGAAATTGTTGTTACAAGTTTGATTTTGAGAAGTTTACTGAGTTTTATGAAATGTATAACGTTGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCAATTATTGGCTTACAATGGTTCAAGATTCTATGGAATACGCGAAGAAGTGTGAAGCTTGTCAGATTCACGCTAACTTCATACATCAGCCACCAGAACCT
CTACACCCCACCGTAGCCTCGTGGCCATTTGAATCTTGGGGACTCGACCTTGTCGTTCCTATAACGCTTAAATCTTTAGCTGGATATTCTTACATACTCACAGAG
ACTGATTATTTTTCAAGAGCTACGCCTTACTCTTTGGTTTATGGTGTAGAAGCTATCCTTCCACTAGAGACAGAAATTTCATCACTACGAATGGCTATGCTAGAA
GGTTTAACCACTGAGGACAATGCAAAATTACGCCTTCAGGAGTTAGAAATACTTGACGAGAAGAGGCTTGATGCGCAACAGGCATTGGAATGCTATCAGGCACTG
TCGCAGGGGATGCAGGGGAATGCCGGGGCGATAAGGGCCAAATCCGGATTCCGAATCCTGGTCCGAATTGTGGACTTGGGAGCGTTGTCTTTTCGGTTTGCCTGT
AAAGAAATTGTTGTTACAAGTTTGATTTTGAGAAGTTTACTGAGTTTTATGAAATGTATAACGTTGCTCTAG
Protein sequenceShow/hide protein sequence
MCNYWLTMVQDSMEYAKKCEACQIHANFIHQPPEPLHPTVASWPFESWGLDLVVPITLKSLAGYSYILTETDYFSRATPYSLVYGVEAILPLETEISSLRMAMLE
GLTTEDNAKLRLQELEILDEKRLDAQQALECYQALSQGMQGNAGAIRAKSGFRILVRIVDLGALSFRFACKEIVVTSLILRSLLSFMKCITLL