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Moc03g00860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g00860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:616166..617621
RNA-Seq ExpressionMoc03g00860
SyntenyMoc03g00860
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]2.8e-2162.07Show/hide
Query:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE
        +SQL+VNQI +EY+ KDP+MEKYL+KV   L +   YE+ QVPRSE +N +ALAKLAS +E +LARSVP+EIL+ PSILEPD+M+++
Subjt:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE

XP_022153142.1 uncharacterized protein LOC111020710 [Momordica charantia]1.3e-2158.25Show/hide
Query:  RVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMM
        RV K  G + I ++  +S LIVNQI +EY+AKDP+MEKYL+KV   L +   YE+ QVPRSE +N +ALAKLAS +E +LARSVP+EIL+ PSILEPD+M
Subjt:  RVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMM

Query:  DIE
        +++
Subjt:  DIE

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]3.3e-2256.88Show/hide
Query:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI
        + L   RV K  G + I ++  +SQLIVNQI +EY+ KDP+MEKYL+KV   L     YE+ QVPRSE +N +ALAKLAS +EI+LARSVP+EIL+ PSI
Subjt:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI

Query:  LEPDMMDIE
        LEPD+M+++
Subjt:  LEPDMMDIE

XP_022157610.1 uncharacterized protein LOC111024267 [Momordica charantia]7.4e-2255.96Show/hide
Query:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI
        + L   RV K  G T I ++  +SQL+VNQI +EY+AKD +MEKYL+KV   L +   YE++QVPR E +NV+ALAKLAS +E +LARS+P+EIL+ PSI
Subjt:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI

Query:  LEPDMMDIE
        LEPD+MD++
Subjt:  LEPDMMDIE

XP_022159396.1 uncharacterized protein LOC111025810 [Momordica charantia]2.8e-2163.22Show/hide
Query:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE
        +SQLIVNQI +EY+ KDP+MEKYL+KV   + +   YE+ QVPRSE +N +ALAKLAS +E +LARSVPIEIL+ PSILEPD+M+++
Subjt:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE

TrEMBL top hitse value%identityAlignment
A0A6J1D7J6 Ribonuclease H1.4e-2162.07Show/hide
Query:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE
        +SQL+VNQI +EY+ KDP+MEKYL+KV   L +   YE+ QVPRSE +N +ALAKLAS +E +LARSVP+EIL+ PSILEPD+M+++
Subjt:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE

A0A6J1DI47 Ribonuclease H6.1e-2258.25Show/hide
Query:  RVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMM
        RV K  G + I ++  +S LIVNQI +EY+AKDP+MEKYL+KV   L +   YE+ QVPRSE +N +ALAKLAS +E +LARSVP+EIL+ PSILEPD+M
Subjt:  RVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMM

Query:  DIE
        +++
Subjt:  DIE

A0A6J1DNM4 Ribonuclease H1.6e-2256.88Show/hide
Query:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI
        + L   RV K  G + I ++  +SQLIVNQI +EY+ KDP+MEKYL+KV   L     YE+ QVPRSE +N +ALAKLAS +EI+LARSVP+EIL+ PSI
Subjt:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI

Query:  LEPDMMDIE
        LEPD+M+++
Subjt:  LEPDMMDIE

A0A6J1DTK4 uncharacterized protein LOC1110242673.6e-2255.96Show/hide
Query:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI
        + L   RV K  G T I ++  +SQL+VNQI +EY+AKD +MEKYL+KV   L +   YE++QVPR E +NV+ALAKLAS +E +LARS+P+EIL+ PSI
Subjt:  SFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSI

Query:  LEPDMMDIE
        LEPD+MD++
Subjt:  LEPDMMDIE

A0A6J1E3S9 uncharacterized protein LOC1110258101.0e-2164.37Show/hide
Query:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE
        +SQLIVNQI +EY+ KDP+MEKYL+KV   L +   YE+ QVPRSE +N +ALAKLAS +E +LARSVPIEIL+ PSILEPD+M+++
Subjt:  ESQLIVNQITKEYEAKDPKMEKYLNKVTRLLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTCGCCATCACTACTGTATGAAAGGGACGTCGAGGGCTGCAACTTGAAACCTACAGGCTGCAGGTTTGCAGACCTGCGAATGAATGCACCATCCACGATCTG
TCGAGGACGTACACCCATCTGTCAGAGCCTCGTACAGCTCAACACATCTCTACCTCCTCATTCGTCGTCCTTCCTGGTCGTTACCCGTGTCTATAAAAGGGAAGGGCTCA
CACCAATCACTGAAATCGGGTGCGAATCACAGCTCATCGTGAATCAGATTACGAAAGAGTATGAGGCGAAAGATCCAAAAATGGAAAAGTACCTAAACAAAGTCACAAGA
CTGTTAGTCGAGCTGACGAAGTACGAGATCCACCAAGTCCCGAGATCGGAGAAAACCAATGTGAACGCCTTGGCTAAGCTAGCCTCTACATTTGAAATCAACCTCGCTAG
GTCAGTTCCAATCGAAATACTCAACGAGCCATCAATACTGGAGCCAGACATGATGGACATTGAGGAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTTCGCCATCACTACTGTATGAAAGGGACGTCGAGGGCTGCAACTTGAAACCTACAGGCTGCAGGTTTGCAGACCTGCGAATGAATGCACCATCCACGATCTG
TCGAGGACGTACACCCATCTGTCAGAGCCTCGTACAGCTCAACACATCTCTACCTCCTCATTCGTCGTCCTTCCTGGTCGTTACCCGTGTCTATAAAAGGGAAGGGCTCA
CACCAATCACTGAAATCGGGTGCGAATCACAGCTCATCGTGAATCAGATTACGAAAGAGTATGAGGCGAAAGATCCAAAAATGGAAAAGTACCTAAACAAAGTCACAAGA
CTGTTAGTCGAGCTGACGAAGTACGAGATCCACCAAGTCCCGAGATCGGAGAAAACCAATGTGAACGCCTTGGCTAAGCTAGCCTCTACATTTGAAATCAACCTCGCTAG
GTCAGTTCCAATCGAAATACTCAACGAGCCATCAATACTGGAGCCAGACATGATGGACATTGAGGAGGACTAG
Protein sequenceShow/hide protein sequence
MGSSPSLLYERDVEGCNLKPTGCRFADLRMNAPSTICRGRTPICQSLVQLNTSLPPHSSSFLVVTRVYKREGLTPITEIGCESQLIVNQITKEYEAKDPKMEKYLNKVTR
LLVELTKYEIHQVPRSEKTNVNALAKLASTFEINLARSVPIEILNEPSILEPDMMDIEED