; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g01190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g01190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:854383..855747
RNA-Seq ExpressionMoc03g01190
SyntenyMoc03g01190
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8732867.1 hypothetical protein F3Y22_tig00001713pilonHSYRG00162 [Hibiscus syriacus]5.3e-2636.75Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------
        LS  +  +    SS    KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+                                       
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------

Query:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                    D  ++ + LRLI SLP SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    +KK  CWGCGQ GH
Subjt:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL
        +KKDC N  A L+NG   +A NV + + +D++F+
Subjt:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]5.3e-2640.17Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR-------------------------
        L  K T  SS  SS  SK     DE+WE +  R A+AI   LAKN+L NVHGISTAK+LW         K   +R                         
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR-------------------------

Query:  --------------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                       ++ + LRLILSL  SYE MK ILMY  +TL +A+ T KLLSEE+RL + G TS E + L+  N KKK    QK   CW CGQ GH
Subjt:  --------------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPNRAGLSNGCGPNADNVSLVKGDD
        +K++CP  A  ++     A+NV++V GDD
Subjt:  MKKDCPNRAGLSNGCGPNADNVSLVKGDD

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]9.1e-2639.74Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------
        L  K T  SS  SS  SK     DE+WE +  R A+AI   LAKN+L NVHGISTAK+LW+                                       
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------

Query:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                       ++ + LRLILSL  SYE MK ILMY  +TL +A+ T KLLSEE+RL + G TS E + L+  N KKK    QK   CW CGQ GH
Subjt:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPNRAGLSNGCGPNADNVSLVKGDD
        +K++CP  A  S      A+NV++V GDD
Subjt:  MKKDCPNRAGLSNGCGPNADNVSLVKGDD

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]9.0e-5058.57Show/hide
Query:  ESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR--------------------------------
        ESSGGSSRGSKKSSMS EDWE++  R A+AI T LAKNIL NVH ISTAKELW         K   +R                                
Subjt:  ESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR--------------------------------

Query:  -------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGHMKKDCPN
                ++ + LRLILSLP SYE MK ILMY  DTLNFAE TSKLLSEERRLK++G TSHEDSALV SNWKKKKD VQKK CCWGCGQ GHMKKDCPN
Subjt:  -------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGHMKKDCPN

Query:  R--AGLSNGC
        R   GL  GC
Subjt:  R--AGLSNGC

XP_039060075.1 G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Hibiscus syriacus]1.5e-2535.95Show/hide
Query:  GCPPRVLGILSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN-----------------------------
        G P  +     P +  +SSG       KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+N                             
Subjt:  GCPPRVLGILSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN-----------------------------

Query:  -------------------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDC
                             +  ++ + LRLI SLP SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    +KK  
Subjt:  -------------------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDC

Query:  CWGCGQFGHMKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKF
        CWGCGQ GH+KKDC N  A  +NG   +A NV + + +D++F
Subjt:  CWGCGQFGHMKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKF

TrEMBL top hitse value%identityAlignment
A0A6A2YS90 Transcription initiation factor IIA subunit 23.1e-2435.47Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------
        LS  +  +    SS    KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+                                       
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------

Query:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                    +  ++ + LRLI SL  SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    +KK  CWGCGQ GH
Subjt:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL
        +KKDC N  A  +NG   +A NV + + +D++F+
Subjt:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL

A0A6A3BK59 CCHC-type domain-containing protein3.7e-2535.9Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------
        LS  +  +    SS    KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+                                       
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------

Query:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                    +  ++ + LRLI SLP SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    +KK  CWGCGQ GH
Subjt:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL
        +KKDC N  A  +NG   +A NV + + +D++F+
Subjt:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL

A0A6A3CWI3 CCHC-type domain-containing protein2.6e-2636.75Show/hide
Query:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------
        LS  +  +    SS    KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+                                       
Subjt:  LSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN--------------------------------------

Query:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH
                    D  ++ + LRLI SLP SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    +KK  CWGCGQ GH
Subjt:  ----------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGH

Query:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL
        +KKDC N  A L+NG   +A NV + + +D++F+
Subjt:  MKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKFL

A0A6A3DA47 CCHC-type domain-containing protein1.1e-2435.12Show/hide
Query:  GCPPRVLGILSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN-----------------------------
        G P  +     P +  +SSG       KS MS+E+WE++  R A+ I   LAKN+L NV   S+ KELW+                              
Subjt:  GCPPRVLGILSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELWKN-----------------------------

Query:  -------------------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDC
                             +  ++ + LRLI SLP SYE M+ +LMY  + +NF+E TSKL+SEERRLKN    S E  AL     +KK    ++K  
Subjt:  -------------------ACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDC

Query:  CWGCGQFGHMKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKF
        CWGCGQ GH+KKDC N  A  +NG   +A NV + + +D++F
Subjt:  CWGCGQFGHMKKDCPN-RAGLSNGCGPNADNVSLVKGDDNKF

A0A6J1CG82 uncharacterized protein LOC1110105214.4e-5058.57Show/hide
Query:  ESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR--------------------------------
        ESSGGSSRGSKKSSMS EDWE++  R A+AI T LAKNIL NVH ISTAKELW         K   +R                                
Subjt:  ESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR--------------------------------

Query:  -------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGHMKKDCPN
                ++ + LRLILSLP SYE MK ILMY  DTLNFAE TSKLLSEERRLK++G TSHEDSALV SNWKKKKD VQKK CCWGCGQ GHMKKDCPN
Subjt:  -------REDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGHMKKDCPN

Query:  R--AGLSNGC
        R   GL  GC
Subjt:  R--AGLSNGC

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-0522.78Show/hide
Query:  KKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR---------------------------------------RED
        K  +M  EDW  +  R A+AI   L+ +++ N+    TA+ +W         K   ++                                        E+
Subjt:  KKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKELW---------KNACDR---------------------------------------RED

Query:  RRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVT------------------SNWKKKKDIVQKKDCCWGCGQFG
         + + L+ SLP SY+ +   +++   T+   + TS LL  E+  K      ++  AL+T                  +  K K     +   C+ C Q G
Subjt:  RRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVT------------------SNWKKKKDIVQKKDCCWGCGQFG

Query:  HMKKDCPN-RAGLSNGCG-PNADN-VSLVKGDDNKFL
        H K+DCPN R G     G  N DN  ++V+ +DN  L
Subjt:  HMKKDCPN-RAGLSNGCG-PNADN-VSLVKGDDNKFL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTAGTCCCGCTAATCTCACGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGTGGTGGTGATCTCGGCGGTCCGAGCTGGGGCATGACTCATGG
GTCACCTTGGGGCACCAATGGCTGTCCTCCACGTGTCCTGGGTATTCTTTCCCCCAAACAGACCTGGGAGTCTAGCGGTGGTTCCAGTAGAGGGTCTAAGAAGTCCAGCA
TGAGTGATGAAGATTGGGAGAAAATAGGTTTCAGGACTGCAACTGCTATACTAACAGGTTTAGCTAAGAATATTCTTGTGAATGTGCATGGAATTTCGACGGCCAAAGAA
CTTTGGAAGAATGCTTGCGATCGAAGAGAAGACAGACGACTACTTAGGCTCATCTTGTCACTTCCACCTTCTTATGAACAGATGAAACTGATCTTGATGTATGTGAATGA
TACTTTGAATTTTGCCGAAGCTACTAGTAAACTGTTGTCAGAAGAAAGAAGATTGAAGAATAAGGGATGTACTTCACATGAAGATTCAGCACTGGTAACTAGCAATTGGA
AGAAGAAGAAAGATATCGTGCAAAAGAAAGATTGTTGTTGGGGATGCGGACAGTTTGGGCACATGAAAAAGGATTGTCCTAATAGAGCCGGTTTGTCAAATGGCTGTGGG
CCGAATGCTGACAATGTTTCTCTCGTCAAGGGAGACGATAATAAGTTCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTAGTCCCGCTAATCTCACGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGTGGTGGTGATCTCGGCGGTCCGAGCTGGGGCATGACTCATGG
GTCACCTTGGGGCACCAATGGCTGTCCTCCACGTGTCCTGGGTATTCTTTCCCCCAAACAGACCTGGGAGTCTAGCGGTGGTTCCAGTAGAGGGTCTAAGAAGTCCAGCA
TGAGTGATGAAGATTGGGAGAAAATAGGTTTCAGGACTGCAACTGCTATACTAACAGGTTTAGCTAAGAATATTCTTGTGAATGTGCATGGAATTTCGACGGCCAAAGAA
CTTTGGAAGAATGCTTGCGATCGAAGAGAAGACAGACGACTACTTAGGCTCATCTTGTCACTTCCACCTTCTTATGAACAGATGAAACTGATCTTGATGTATGTGAATGA
TACTTTGAATTTTGCCGAAGCTACTAGTAAACTGTTGTCAGAAGAAAGAAGATTGAAGAATAAGGGATGTACTTCACATGAAGATTCAGCACTGGTAACTAGCAATTGGA
AGAAGAAGAAAGATATCGTGCAAAAGAAAGATTGTTGTTGGGGATGCGGACAGTTTGGGCACATGAAAAAGGATTGTCCTAATAGAGCCGGTTTGTCAAATGGCTGTGGG
CCGAATGCTGACAATGTTTCTCTCGTCAAGGGAGACGATAATAAGTTCCTCTGA
Protein sequenceShow/hide protein sequence
MGGSPANLTTVTPGNLGTVGYTRGGDLGGPSWGMTHGSPWGTNGCPPRVLGILSPKQTWESSGGSSRGSKKSSMSDEDWEKIGFRTATAILTGLAKNILVNVHGISTAKE
LWKNACDRREDRRLLRLILSLPPSYEQMKLILMYVNDTLNFAEATSKLLSEERRLKNKGCTSHEDSALVTSNWKKKKDIVQKKDCCWGCGQFGHMKKDCPNRAGLSNGCG
PNADNVSLVKGDDNKFL