; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g01210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g01210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:860355..861598
RNA-Seq ExpressionMoc03g01210
SyntenyMoc03g01210
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]3.1e-1978.18Show/hide
Query:  VLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        V +K+Q+HVG LDP+WEGPFEV+GI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  VLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]1.6e-0454.76Show/hide
Query:  MEIDAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR
        ME++ PE SWMDPI +FI+ N PQD K  +K++R+ ARF+ R
Subjt:  MEIDAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]1.3e-1750.53Show/hide
Query:  KERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHV-----GALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY
        +E R+ AR R A +  R+AR+YN+ V+ R F+ G LVLRK+  +      GA  PTWEGP++V  +VR GTY L D +G  L HPW+A+HLKRYY
Subjt:  KERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHV-----GALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]5.6e-2164.56Show/hide
Query:  ERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHP
        E+R+ A+ R A +  +MARHYN+ VR R+FQ+G+LVLRKVQ HV  L+P+WEGPFEV+GIVRPGTY+LADL+G +L+HP
Subjt:  ERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHP

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]6.2e-2059.26Show/hide
Query:  RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY
        R A +  RMAR+YNA V+ RTF+   LVL+KV  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]4.0e-2766.29Show/hide
Query:  ERRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        +R     R      RMARHYN  ++PR+FQVGHLV  K+Q+HVG LDP+WE  FEV+GIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  ERRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A6J1CSJ1 Ribonuclease H1.5e-1978.18Show/hide
Query:  VLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        V +K+Q+HVG LDP+WEGPFEV+GI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  VLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

A0A6J1CSJ1 Ribonuclease H7.9e-0554.76Show/hide
Query:  MEIDAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR
        ME++ PE SWMDPI +FI+ N PQD K  +K++R+ ARF+ R
Subjt:  MEIDAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGR

A0A6J1CSJ1 Ribonuclease H4.3e-1952.69Show/hide
Query:  RRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKV-----QTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        R K   R  R+  +MARHYN+ V+PR   +G LVLRKV         G L P WEGP++V  + RPGTY L D+ G  L+HPWNAEHL+RYYP
Subjt:  RRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKV-----QTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

A0A6J1DP99 uncharacterized protein K02A2.6-like2.7e-2164.56Show/hide
Query:  ERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHP
        E+R+ A+ R A +  +MARHYN+ VR R+FQ+G+LVLRKVQ HV  L+P+WEGPFEV+GIVRPGTY+LADL+G +L+HP
Subjt:  ERRKLAR-RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHP

A0A6J1DWM2 Ribonuclease H3.0e-2059.26Show/hide
Query:  RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY
        R A +  RMAR+YNA V+ RTF+   LVL+KV  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYY

A0A6J1DXL9 uncharacterized protein LOC1110254481.9e-2766.29Show/hide
Query:  ERRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
        +R     R      RMARHYN  ++PR+FQVGHLV  K+Q+HVG LDP+WE  FEV+GIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  ERRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCGACGCTCCCGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGC
TCGGTTCGTGGGCAGAATGGCCAGACACTACAACGCCTGCGTTCGACCTCGAACCTTTCAAGTCGGACATCTGGTCTTAAGGAAGGTCCAGACCCATGTGGGTGCCCTTG
ACCCGACCTGGGAGGGGCCGTTTGAAGTCCAGGGAATAGTCCGACCTGGGACGTACGTGTTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCATGGAACGCGGAACAC
CTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCGACGCTCCCGAGTCCTCATGGATGGACCCGATTGCGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGC
TCGGTTCGTGGGCAGAATGGCCAGACACTACAACGCCTGCGTTCGACCTCGAACCTTTCAAGTCGGACATCTGGTCTTAAGGAAGGTCCAGACCCATGTGGGTGCCCTTG
ACCCGACCTGGGAGGGGCCGTTTGAAGTCCAGGGAATAGTCCGACCTGGGACGTACGTGTTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCATGGAACGCGGAACAC
CTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MEIDAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVGRMARHYNACVRPRTFQVGHLVLRKVQTHVGALDPTWEGPFEVQGIVRPGTYVLADLKGDVLAHPWNAEH
LKRYYP