; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g01420 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g01420
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:1075108..1079018
RNA-Seq ExpressionMoc03g01420
SyntenyMoc03g01420
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]3.7e-5685.5Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+M+KYL KV+S+LVQFE+YEVNQVPRSENSN DALAKLASA+ETDLARSV + ILDNPSILEPDLMEV+TP PSWMDPIVEFIK NPPQDSK HKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        +RKVA+FILRDGALYRRGFSLPLLKCVTPE+
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]1.5e-5787.79Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+MEKYL KV+SHL Q ++YEVNQVPRSENSNADALAKLASA+ETDLARSVP+EILDNPSILEPDLMEVDTP PSWMD IVEFIKGN PQD KEHKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARKVAQFILRDGALYR+GFSLPLLKCVTPE+
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]3.7e-5682.44Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +D +MEKYL +V+SHL QFE+YEV+QVPRSENSNADALAKLASA+ETDLARSVP+EILDNPSIL+PD+ME+D P+PSWMDPIVEFI+GNPPQ+ KE KKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARK A+F+LRDGALYRRGFSLPLLKCVTPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

XP_022155184.1 uncharacterized protein LOC111022318 [Momordica charantia]1.3e-5686.26Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +D +MEKYL KV+SHLVQFE+YEVNQVPRSEN NADALA+LA A+E DLARSVP+EILD PSILE D+MEVDTPAPSWMDPIVEFIKGNPPQDSKE KKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARKV +FILRDGALYRRGFSLPLLKCVTPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

XP_022157610.1 uncharacterized protein LOC111024267 [Momordica charantia]1.7e-5682.44Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+MEKYL KV+SHL QF++YEVNQVPR ENSN DALAKLASA+ETDLARS+P+EILDNPSILEPD+M+VD  AP WMDP+VEFIKGNPPQDSKEHKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        AR+ AQF+LRDGALY RGFSLPLLKC TPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

TrEMBL top hitse value%identityAlignment
A0A6J1CSJ1 Ribonuclease H1.8e-5685.5Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+M+KYL KV+S+LVQFE+YEVNQVPRSENSN DALAKLASA+ETDLARSV + ILDNPSILEPDLMEV+TP PSWMDPIVEFIK NPPQDSK HKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        +RKVA+FILRDGALYRRGFSLPLLKCVTPE+
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

A0A6J1D6M1 Ribonuclease H7.3e-5887.79Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+MEKYL KV+SHL Q ++YEVNQVPRSENSNADALAKLASA+ETDLARSVP+EILDNPSILEPDLMEVDTP PSWMD IVEFIKGN PQD KEHKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARKVAQFILRDGALYR+GFSLPLLKCVTPE+
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

A0A6J1DBZ0 uncharacterized protein LOC1110196281.8e-5682.44Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +D +MEKYL +V+SHL QFE+YEV+QVPRSENSNADALAKLASA+ETDLARSVP+EILDNPSIL+PD+ME+D P+PSWMDPIVEFI+GNPPQ+ KE KKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARK A+F+LRDGALYRRGFSLPLLKCVTPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

A0A6J1DPI3 Ribonuclease H6.2e-5786.26Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +D +MEKYL KV+SHLVQFE+YEVNQVPRSEN NADALA+LA A+E DLARSVP+EILD PSILE D+MEVDTPAPSWMDPIVEFIKGNPPQDSKE KKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        ARKV +FILRDGALYRRGFSLPLLKCVTPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

A0A6J1DTK4 uncharacterized protein LOC1110242678.1e-5782.44Show/hide
Query:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM
        +DS+MEKYL KV+SHL QF++YEVNQVPR ENSN DALAKLASA+ETDLARS+P+EILDNPSILEPD+M+VD  AP WMDP+VEFIKGNPPQDSKEHKKM
Subjt:  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKM

Query:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE
        AR+ AQF+LRDGALY RGFSLPLLKC TPEE
Subjt:  ARKVAQFILRDGALYRRGFSLPLLKCVTPEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATCTGGTTAGTAAGTTACTCGTTCGTGGGTGTTGCACCGCAGATATTGTCGTGGGGTGTTGGGCCGCAAATCTGGCCGAGGAGGTTGTCGCATATCTA
ATCGAGTTCGTGTCTGTTCGTGGGTGTTGCACTGCTATTGAGGTAACTGCAGATCTTGTCAAATTCCTGGCTGTTCGAGACTCCAAGATGGAAAAATATCTAGGC
AAAGTCAAATCGCACCTCGTCCAGTTTGAGTCCTACGAGGTGAATCAAGTTCCAAGATCAGAAAATTCCAACGCAGATGCCTTAGCCAAATTGGCATCGGCATTT
GAGACTGACCTGGCCAGATCGGTCCCGATCGAGATCCTGGACAATCCTTCAATCTTGGAGCCAGATTTGATGGAAGTTGACACTCCAGCACCCTCGTGGATGGAT
CCAATCGTGGAGTTCATCAAAGGAAATCCACCGCAAGATTCAAAAGAGCACAAGAAAATGGCGCGAAAAGTAGCTCAGTTCATACTCCGAGATGGAGCATTGTAC
CGACGTGGCTTCTCCCTGCCTTTGCTTAAGTGTGTAACTCCTGAAGAAGCTCGCCTTGGGAGCCAAGAAGGTTCATCTCCTGAGATCCGCCCTACTGTGAAGGGA
CGTCTTCTTGCTTGGTGCCGACATCAATTGGCTCCTGACTTGGAGCGTCTTCATCTTCCATGTCGGAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATCTGGTTAGTAAGTTACTCGTTCGTGGGTGTTGCACCGCAGATATTGTCGTGGGGTGTTGGGCCGCAAATCTGGCCGAGGAGGTTGTCGCATATCTA
ATCGAGTTCGTGTCTGTTCGTGGGTGTTGCACTGCTATTGAGGTAACTGCAGATCTTGTCAAATTCCTGGCTGTTCGAGACTCCAAGATGGAAAAATATCTAGGC
AAAGTCAAATCGCACCTCGTCCAGTTTGAGTCCTACGAGGTGAATCAAGTTCCAAGATCAGAAAATTCCAACGCAGATGCCTTAGCCAAATTGGCATCGGCATTT
GAGACTGACCTGGCCAGATCGGTCCCGATCGAGATCCTGGACAATCCTTCAATCTTGGAGCCAGATTTGATGGAAGTTGACACTCCAGCACCCTCGTGGATGGAT
CCAATCGTGGAGTTCATCAAAGGAAATCCACCGCAAGATTCAAAAGAGCACAAGAAAATGGCGCGAAAAGTAGCTCAGTTCATACTCCGAGATGGAGCATTGTAC
CGACGTGGCTTCTCCCTGCCTTTGCTTAAGTGTGTAACTCCTGAAGAAGCTCGCCTTGGGAGCCAAGAAGGTTCATCTCCTGAGATCCGCCCTACTGTGAAGGGA
CGTCTTCTTGCTTGGTGCCGACATCAATTGGCTCCTGACTTGGAGCGTCTTCATCTTCCATGTCGGAGTAGTTAG
Protein sequenceShow/hide protein sequence
MSNLVSKLLVRGCCTADIVVGCWAANLAEEVVAYLIEFVSVRGCCTAIEVTADLVKFLAVRDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAF
ETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFSLPLLKCVTPEEARLGSQEGSSPEIRPTVKG
RLLAWCRHQLAPDLERLHLPCRSS