; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g01930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g01930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:1460767..1462622
RNA-Seq ExpressionMoc03g01930
SyntenyMoc03g01930
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8670919.1 hypothetical protein F3Y22_tig00112044pilonHSYRG00120 [Hibiscus syriacus]1.6e-2839.52Show/hide
Query:  KIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRP---SEGAF----EKLSGDSGPMESSGGS---------------------------SRAKELWE
        + D+EKFDGRINFGLWQVQV D+LIQSGL+KALKG+P   SEG         SGD G  + S                              S   ELWE
Subjt:  KIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRP---SEGAF----EKLSGDSGPMESSGGS---------------------------SRAKELWE

Query:  KLDALYQTTGISNRLYLKEQFHALRMEE--------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPN-RADSSKGSGR--
        KL+ +YQ   +SNRLYLKE+FH L+MEE        EERRLK+      E+  L     +KK    +KK  CWGCGQ  H+KKDC N  A+S+ GS +  
Subjt:  KLDALYQTTGISNRLYLKEQFHALRMEE--------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPN-RADSSKGSGR--

Query:  --DADSVSLTGETMISSFEERENSSSWYVRF--TMIEDVMLAVSQVYT
          + ++     E +    +ER N+ +  V +   M E V+  + +  T
Subjt:  --DADSVSLTGETMISSFEERENSSSWYVRF--TMIEDVMLAVSQVYT

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.5e-2636.33Show/hide
Query:  SPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDS------------------------GPMESSGGSSRAKELWEKLDALYQ
        SP++ DVEK+DGRINFGLWQVQV DVLIQSGLHKAL+G+P+  + +  SG S                          + +  G S AK+LWEKL+ LYQ
Subjt:  SPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDS------------------------GPMESSGGSSRAKELWEKLDALYQ

Query:  TTGISNRLYLKEQFHALRME-------------------------------------------------------------------EEERRLKSEWRTL
          GI NRLYLKEQFH LRM+                                                                    EE+RL S   T 
Subjt:  TTGISNRLYLKEQFHALRME-------------------------------------------------------------------EEERRLKSEWRTL

Query:  HENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNRADSSKGSGRDADSVSL
         E + L+  N KKK    QK   CW CGQS H+K++CP  ADS+  S + A++V++
Subjt:  HENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNRADSSKGSGRDADSVSL

KAF7802225.1 cytochrome p450 [Senna tora]1.4e-2742.53Show/hide
Query:  MSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEK----------------------LSGDSGPMESSGGSSRAKELWEKLDA
        MS F S VK DVEKFDGRINFGLWQVQV DVLIQSGLHKAL+G+ S    EK                      LS     + +  G S AKELW+KL+ 
Subjt:  MSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEK----------------------LSGDSGPMESSGGSSRAKELWEKLDA

Query:  LYQTTGISNRLYLKEQFHALRMEE---------------------------EERRLKSEWR--TLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKK
        LYQ  GISN L LKEQFH L M+E                           E++ L+  W   + +E    +  + +KK     K   CW CG+S H+KK
Subjt:  LYQTTGISNRLYLKEQFHALRMEE---------------------------EERRLKSEWR--TLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKK

Query:  DCPNRADSSKGSGRDADSVSL
        +CP  A  + GS  DA SVSL
Subjt:  DCPNRADSSKGSGRDADSVSL

KAF7810708.1 cytochrome p450 [Senna tora]1.1e-2944.04Show/hide
Query:  MSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEK-----LSGD-----------------SGPMESSGGSSRAKELWEKLDA
        MS F S +K DVEKFDGRINFG WQVQV DVLIQSGL KAL+G+ S    EK       GD                    + +  G S AKELW+KL+ 
Subjt:  MSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEK-----LSGD-----------------SGPMESSGGSSRAKELWEKLDA

Query:  LYQTTGISNRLYLKEQFHALRMEE--------------------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCP
        LYQ  GISNRL LKEQFH LRM E                          EE+R+K E R    +S +V  N    +    K   CW CG+S H+KK+CP
Subjt:  LYQTTGISNRLYLKEQFHALRMEE--------------------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCP

Query:  NRADSSKGSGRDADSVSL
          A  + GS  DA SVSL
Subjt:  NRADSSKGSGRDADSVSL

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]2.0e-5853.01Show/hide
Query:  ECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR---------------------------
        ECEADMSFFMSPVKIDVEKFDG INFGLWQVQV DVLIQS LHKALKGRPSEGA EKLS D GPMESSGGSSR                           
Subjt:  ECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR---------------------------

Query:  -------------AKELWEKLDALYQTTGISNRLYLKEQFHALRMEE-----------------------------------------------------
                     AKELWEKL+ALYQ  GISNRLYLKEQFH L+MEE                                                     
Subjt:  -------------AKELWEKLDALYQTTGISNRLYLKEQFHALRMEE-----------------------------------------------------

Query:  --------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNR
                      EERRLKSE RT HE+S LV SNWKKKKDS+QKKACCWGCGQS HMKKDCPNR
Subjt:  --------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNR

TrEMBL top hitse value%identityAlignment
A0A2H5QXN2 Uncharacterized protein1.6e-2665.66Show/hide
Query:  FMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSRAKELWEKLDALYQTTGISNRLYLKEQFHALRMEE
        F SPVK ++EKFDGRINFGLWQVQV DVLIQSGLHKALKG+PS            P  +SG     KELWEKL+ LY+T  ISNRLYLKE+FH LRM E
Subjt:  FMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSRAKELWEKLDALYQTTGISNRLYLKEQFHALRMEE

A0A6A2Y9V1 CCHC-type domain-containing protein7.8e-2939.52Show/hide
Query:  KIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRP---SEGAF----EKLSGDSGPMESSGGS---------------------------SRAKELWE
        + D+EKFDGRINFGLWQVQV D+LIQSGL+KALKG+P   SEG         SGD G  + S                              S   ELWE
Subjt:  KIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRP---SEGAF----EKLSGDSGPMESSGGS---------------------------SRAKELWE

Query:  KLDALYQTTGISNRLYLKEQFHALRMEE--------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPN-RADSSKGSGR--
        KL+ +YQ   +SNRLYLKE+FH L+MEE        EERRLK+      E+  L     +KK    +KK  CWGCGQ  H+KKDC N  A+S+ GS +  
Subjt:  KLDALYQTTGISNRLYLKEQFHALRMEE--------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPN-RADSSKGSGR--

Query:  --DADSVSLTGETMISSFEERENSSSWYVRF--TMIEDVMLAVSQVYT
          + ++     E +    +ER N+ +  V +   M E V+  + +  T
Subjt:  --DADSVSLTGETMISSFEERENSSSWYVRF--TMIEDVMLAVSQVYT

A0A6J1CG82 uncharacterized protein LOC1110105219.5e-5953.01Show/hide
Query:  ECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR---------------------------
        ECEADMSFFMSPVKIDVEKFDG INFGLWQVQV DVLIQS LHKALKGRPSEGA EKLS D GPMESSGGSSR                           
Subjt:  ECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR---------------------------

Query:  -------------AKELWEKLDALYQTTGISNRLYLKEQFHALRMEE-----------------------------------------------------
                     AKELWEKL+ALYQ  GISNRLYLKEQFH L+MEE                                                     
Subjt:  -------------AKELWEKLDALYQTTGISNRLYLKEQFHALRMEE-----------------------------------------------------

Query:  --------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNR
                      EERRLKSE RT HE+S LV SNWKKKKDS+QKKACCWGCGQS HMKKDCPNR
Subjt:  --------------EERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNR

A0A6J1DNQ5 uncharacterized protein LOC1110220753.6e-2684.21Show/hide
Query:  IRLECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR
        IR ECEAD+SF MSPVKIDVEKFD  INFGLWQVQV DV+IQSGLHKALKGRPSE A EKLSGD GPMESS GS R
Subjt:  IRLECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR

V4T6T3 Uncharacterized protein1.6e-2665.66Show/hide
Query:  FMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSRAKELWEKLDALYQTTGISNRLYLKEQFHALRMEE
        F SPVK ++EKFDGRINFGLWQVQV DVLIQSGLHKALKG+PS            P  +SG     KELWEKL+ LY+T  ISNRLYLKE+FH LRM E
Subjt:  FMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSRAKELWEKLDALYQTTGISNRLYLKEQFHALRMEE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-0833.33Show/hide
Query:  MSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR----------------AKELWEKLDALYQTTGISNR
        MS VK +V KF+G   F  WQ ++ D+LIQ GLHK L     +    K    +   E +  + R                A+ +W +L++LY +  ++N+
Subjt:  MSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSR----------------AKELWEKLDALYQTTGISNR

Query:  LYLKEQFHALRMEE
        LYLK+Q +AL M E
Subjt:  LYLKEQFHALRMEE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAGAGACAAGATGATATTCGCTTGGAGTGTGAAGCAGATATGTCATTCTTTATGAGTCCAGTGAAGATTGACGTGGAGAAATTTGATGGAAGGATCAACTTCGG
CTTGTGGCAAGTGCAAGTCAATGATGTGCTGATACAATCTGGGTTACACAAAGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTTTGAAAAGCTAAGCGGTGATAGTGGTC
CAATGGAGTCCAGTGGTGGTTCCAGCAGAGCCAAAGAACTTTGGGAGAAGCTCGATGCGTTGTATCAGACAACGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTT
CACGCGTTGCGAATGGAAGAAGAGGAAAGAAGGCTGAAGAGTGAATGGCGTACTTTACATGAAAATTCGACACTGGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCAT
ACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTAGGCACATGAAGAAAGATTGTCCTAACAGAGCCGACTCGTCAAAGGGCTCTGGACGAGATGCCGACAGTGTTT
CTCTCACAGGGGAGACGATGATCAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTCCGATTTACCATGATAGAAGATGTGATGTTAGCGGTTTCACAAGTT
TACACATGGGCATTGATTTGGCGGTTATGCAAGGTGTGTGTGGTGGAAGTTATGTCGATGGCTAAAGAACTTCCAGGTTTATCGACATGCGATGATGAAAAAAAATTTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAGAGACAAGATGATATTCGCTTGGAGTGTGAAGCAGATATGTCATTCTTTATGAGTCCAGTGAAGATTGACGTGGAGAAATTTGATGGAAGGATCAACTTCGG
CTTGTGGCAAGTGCAAGTCAATGATGTGCTGATACAATCTGGGTTACACAAAGCGTTGAAGGGAAGACCGAGTGAAGGTGCTTTTGAAAAGCTAAGCGGTGATAGTGGTC
CAATGGAGTCCAGTGGTGGTTCCAGCAGAGCCAAAGAACTTTGGGAGAAGCTCGATGCGTTGTATCAGACAACGGGCATCTCAAATCGGCTGTACCTGAAGGAGCAGTTT
CACGCGTTGCGAATGGAAGAAGAGGAAAGAAGGCTGAAGAGTGAATGGCGTACTTTACATGAAAATTCGACACTGGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCAT
ACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTAGGCACATGAAGAAAGATTGTCCTAACAGAGCCGACTCGTCAAAGGGCTCTGGACGAGATGCCGACAGTGTTT
CTCTCACAGGGGAGACGATGATCAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTCCGATTTACCATGATAGAAGATGTGATGTTAGCGGTTTCACAAGTT
TACACATGGGCATTGATTTGGCGGTTATGCAAGGTGTGTGTGGTGGAAGTTATGTCGATGGCTAAAGAACTTCCAGGTTTATCGACATGCGATGATGAAAAAAAATTTTG
A
Protein sequenceShow/hide protein sequence
MRKRQDDIRLECEADMSFFMSPVKIDVEKFDGRINFGLWQVQVNDVLIQSGLHKALKGRPSEGAFEKLSGDSGPMESSGGSSRAKELWEKLDALYQTTGISNRLYLKEQF
HALRMEEEERRLKSEWRTLHENSTLVASNWKKKKDSIQKKACCWGCGQSRHMKKDCPNRADSSKGSGRDADSVSLTGETMISSFEERENSSSWYVRFTMIEDVMLAVSQV
YTWALIWRLCKVCVVEVMSMAKELPGLSTCDDEKKF