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Moc03g02170 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g02170
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr3:1634811..1636581
RNA-Seq ExpressionMoc03g02170
SyntenyMoc03g02170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]1.0e-4947.69Show/hide
Query:  LNAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTA
        +N ++LADD  + IR Y AP F + NP I  P I+A +FELKP MFQMLQ VG F G+ +EDPH HLR F++V+DSFK++GVS+E + LKLF +SLRD A
Subjt:  LNAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTA

Query:  GAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLS
         +WL+ LP +S+T+WNDLA                                           KCPHHGIPHCIQ+ET+YNGLN A+ +V+DAS NG +LS
Subjt:  GAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLS

Query:  KPYGEAFVMKNATSSD
        K Y EAF +    +S+
Subjt:  KPYGEAFVMKNATSSD

XP_030478162.1 uncharacterized protein LOC115695219 [Cannabis sativa]3.0e-4646.98Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        N + LADD  Q IR Y AP F + N  I  P I+A  FELKP MFQMLQ VG F G  +EDPH H+  F++V+DSFK++GVS+EA+ LKLF +SLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        AWL+ LP +S+T+WN+LA                                           KCPHHGIPHCIQ+ET+YNGLN A+ +V++AS NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EAF +    +S+
Subjt:  PYGEAFVMKNATSSD

XP_030483210.1 uncharacterized protein LOC115699807 [Cannabis sativa]2.7e-4749.5Show/hide
Query:  LADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAGAWLD
        +ADD +Q IR Y AP F + NP I  P I+A +FELKP MFQMLQ VG F G+ +EDPH HLR FM+V+DSFK+ GV+++A+ LKLF YSLRD A AWL+
Subjt:  LADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAGAWLD

Query:  FLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSKPYGE
         LP+ S+T+W +LA                                           KCPHHGIPHCIQ+ET+YNGLN  T +V+DAS NG LL+K Y E
Subjt:  FLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSKPYGE

Query:  AF
        A+
Subjt:  AF

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]6.5e-4948.37Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        N + LADD  + IR Y AP F + NP I  P I+A  FELKP MFQMLQ VG F G  +EDPH H+R F++V+DSFK++GVS+EA+ LKLF +SLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        AWL+ LP +S+T+WNDLA                                           KCPHHGIPHCIQ+ET+YNGLN A+ +V+DAS NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EAF +    +S+
Subjt:  PYGEAFVMKNATSSD

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]4.2e-4847.91Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        N + LADD  + IR Y AP F + NP I  P I+A  FELKP MFQMLQ VG F G  +EDPH H+R F++V+DSFK++GVS+EA+ LKLF +SLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        AWL+ LP +S+T+WNDLA                                           KCPHHGIPHCIQ+ET+YNGLN A  +V+DA  NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EAF +    +S+
Subjt:  PYGEAFVMKNATSSD

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333943.4e-4344.65Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        NA+ LADD E+ IRAY  P   + NP I  P ++A  FELKP MFQMLQ +G F+GL SEDPH HL+ F+ V+DSF+ + V K+ + L LF YSLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        +WL+ L   +I SWN L                                            KCPHHG+PHCIQ+ET+YNGLN AT  V+DAS NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EA+ +    +S+
Subjt:  PYGEAFVMKNATSSD

A0A6J1EQ90 uncharacterized protein LOC1114364117.8e-4042.34Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQV-------ADSFKVEGVSKEAMGLKLFLY
        N + LADD E+ IRAY  P   + NP I  P I+   FELKP MFQMLQ +G F+GL  EDPH HL+ F+ V       +DSF+ +GV K+ + L LF Y
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQV-------ADSFKVEGVSKEAMGLKLFLY

Query:  SLRDTAGAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDAST
         LRD A +WL+ L   +I SWN LA                                           KCPHHG+PHCIQ+ET+YNGLN  T  V+DAS 
Subjt:  SLRDTAGAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDAST

Query:  NGTLLSKPYGEAFVMKNATSSD
        NG +LSK Y EA+ +    +S+
Subjt:  NGTLLSKPYGEAFVMKNATSSD

A0A6J1G7Q6 uncharacterized protein LOC1114515985.2e-4444.65Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        NA+ +ADD E+ IRAY  P   + NP I  P ++A  FELKP MFQMLQ +G F+GL+S+DPH HL+ F+ V+DSF+ +GV K+ + L  F YSLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        +WL+ L    I SWN LA                                           KCPHHG+PHCIQIET+YNGLN AT  V+DAS NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EA+ +    +S+
Subjt:  PYGEAFVMKNATSSD

A0A6J1H7E4 uncharacterized protein LOC1114611688.1e-4545.58Show/hide
Query:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG
        NA+ LADD E+ IRAY  P   + NP I  P ++A  FELKP MFQMLQ +G F+GL SEDPH HL+ F+ V+DSF+ +GV K+ + L LF YSLRD A 
Subjt:  NAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTAG

Query:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK
        +WL+ L   +I SWN LA                                           KCPHHG+PHCIQ+ET+YNGLN AT  V+DAS NG +LSK
Subjt:  AWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSK

Query:  PYGEAFVMKNATSSD
         Y EA+ +    +S+
Subjt:  PYGEAFVMKNATSSD

U5CUI2 Retrotrans_gag domain-containing protein4.9e-5047.69Show/hide
Query:  LNAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTA
        +N ++LADD  + IR Y AP F + NP I  P I+A +FELKP MFQMLQ VG F G+ +EDPH HLR F++V+DSFK++GVS+E + LKLF +SLRD A
Subjt:  LNAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEGVSKEAMGLKLFLYSLRDTA

Query:  GAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLS
         +WL+ LP +S+T+WNDLA                                           KCPHHGIPHCIQ+ET+YNGLN A+ +V+DAS NG +LS
Subjt:  GAWLDFLPTESITSWNDLA-------------------------------------------KCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLS

Query:  KPYGEAFVMKNATSSD
        K Y EAF +    +S+
Subjt:  KPYGEAFVMKNATSSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTGAATGCACCAAATTCACCTGAATTGGAGGTAGAGAGGATAGAAAGGGTTGGAGCTGACCAAGCTGTGCCAATACCTCCCTTGAATGCTGTCTTGCTCGCTGA
TGATACCGAGCAGGAAATTAGAGCATACGTGGCTCCAACTTTCTATGACTTCAATCCCGTAATTGCAGATCCTATAATTAAAGCTAATAGGTTTGAGTTGAAGCCGACAA
TGTTTCAAATGCTCCAGAACGTGGGGCCATTCTATGGGCTTGCATCAGAAGATCCTCATAAACATTTACGATATTTTATGCAAGTGGCAGATTCATTTAAGGTAGAAGGA
GTCAGTAAGGAGGCTATGGGCTTAAAGTTATTCCTTTACTCTTTGAGGGACACTGCGGGAGCATGGTTGGATTTCTTGCCTACCGAGTCTATTACCTCATGGAATGATTT
AGCTAAGTGCCCTCATCATGGCATACCACACTGCATCCAAATTGAAACTTATTACAACGGATTAAATGAGGCTACACATTTGGTGATAGATGCCTCGACAAATGGAACGT
TGTTGTCAAAACCATATGGAGAGGCATTTGTAATGAAGAATGCAACTTCAAGTGATGCTGGAGCATCCAAGGCTAAGGTGAATGCTATGCATCGTATTAGTCAAGCCTCG
TTACTTCTGAGCCATGCAACATCCTTATGGAATATGGAAGTACAGATTGCATATCAGCAAGAGGAATACAATGATGGAGAGAGAGCCAAAAATGAAATTTTCGAGGAAAG
AGGTCAGGCCAAACAGCCAAATGAGTCAGCTAGCGTGACTTTAGGGCATAATACAGAGCAGTCGGGAGACAAAAAGGACAGTGGAACACAGACCATAGAATTAGAGGGTC
ACGAGTCAGGTGAGGATAGTAAAGAGGGTAAGACGTCTAAGGTTGACAATGTTGAAGCATCCTTATCTAGAACAGATGGTAAGCTAAAGTATCCAGAACAGCCCACTACT
CCATCAACCCCAACGGAATATGTTCCTATAATACCCCACCCAAAAAGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCTGAATGCACCAAATTCACCTGAATTGGAGGTAGAGAGGATAGAAAGGGTTGGAGCTGACCAAGCTGTGCCAATACCTCCCTTGAATGCTGTCTTGCTCGCTGA
TGATACCGAGCAGGAAATTAGAGCATACGTGGCTCCAACTTTCTATGACTTCAATCCCGTAATTGCAGATCCTATAATTAAAGCTAATAGGTTTGAGTTGAAGCCGACAA
TGTTTCAAATGCTCCAGAACGTGGGGCCATTCTATGGGCTTGCATCAGAAGATCCTCATAAACATTTACGATATTTTATGCAAGTGGCAGATTCATTTAAGGTAGAAGGA
GTCAGTAAGGAGGCTATGGGCTTAAAGTTATTCCTTTACTCTTTGAGGGACACTGCGGGAGCATGGTTGGATTTCTTGCCTACCGAGTCTATTACCTCATGGAATGATTT
AGCTAAGTGCCCTCATCATGGCATACCACACTGCATCCAAATTGAAACTTATTACAACGGATTAAATGAGGCTACACATTTGGTGATAGATGCCTCGACAAATGGAACGT
TGTTGTCAAAACCATATGGAGAGGCATTTGTAATGAAGAATGCAACTTCAAGTGATGCTGGAGCATCCAAGGCTAAGGTGAATGCTATGCATCGTATTAGTCAAGCCTCG
TTACTTCTGAGCCATGCAACATCCTTATGGAATATGGAAGTACAGATTGCATATCAGCAAGAGGAATACAATGATGGAGAGAGAGCCAAAAATGAAATTTTCGAGGAAAG
AGGTCAGGCCAAACAGCCAAATGAGTCAGCTAGCGTGACTTTAGGGCATAATACAGAGCAGTCGGGAGACAAAAAGGACAGTGGAACACAGACCATAGAATTAGAGGGTC
ACGAGTCAGGTGAGGATAGTAAAGAGGGTAAGACGTCTAAGGTTGACAATGTTGAAGCATCCTTATCTAGAACAGATGGTAAGCTAAAGTATCCAGAACAGCCCACTACT
CCATCAACCCCAACGGAATATGTTCCTATAATACCCCACCCAAAAAGAATGTAG
Protein sequenceShow/hide protein sequence
MNLNAPNSPELEVERIERVGADQAVPIPPLNAVLLADDTEQEIRAYVAPTFYDFNPVIADPIIKANRFELKPTMFQMLQNVGPFYGLASEDPHKHLRYFMQVADSFKVEG
VSKEAMGLKLFLYSLRDTAGAWLDFLPTESITSWNDLAKCPHHGIPHCIQIETYYNGLNEATHLVIDASTNGTLLSKPYGEAFVMKNATSSDAGASKAKVNAMHRISQAS
LLLSHATSLWNMEVQIAYQQEEYNDGERAKNEIFEERGQAKQPNESASVTLGHNTEQSGDKKDSGTQTIELEGHESGEDSKEGKTSKVDNVEASLSRTDGKLKYPEQPTT
PSTPTEYVPIIPHPKRM