; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g02470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g02470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:1865629..1867244
RNA-Seq ExpressionMoc03g02470
SyntenyMoc03g02470
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0817490.1 hypothetical protein [Gossypium harknessii]1.6e-0524.16Show/hide
Query:  YEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIEDNKV----TNQT-PKESN-----------L
        YE L  FC+ CG++GH +KDC      RK   ++   Y +    ++ +   E    +   + +  +      KV    T++T  KE+N           +
Subjt:  YEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIEDNKV----TNQT-PKESN-----------L

Query:  GGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAAR---CPE-----------------RNENFKLECSGVGNPRTLRVLRHVVGNHNP-----------
        GG +  K+      I +       + N  + E + R    PE                 RNEN+KLECS +G     +     +  HNP           
Subjt:  GGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAAR---CPE-----------------RNENFKLECSGVGNPRTLRVLRHVVGNHNP-----------

Query:  ----------------IGLPHGNQVGGLMLPWKE-TDVTIMSNSLGHIDACITE--NDCRWRFTGIYNN
                        I +      GGL L WKE T +++ S S  HID  + E  ++  WR TG Y +
Subjt:  ----------------IGLPHGNQVGGLMLPWKE-TDVTIMSNSLGHIDACITE--NDCRWRFTGIYNN

OMP04828.1 Ribosomal protein S21 [Corchorus olitorius]2.7e-0536.67Show/hide
Query:  DEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIHN-MVRGYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIEDNKVTNQTP
        D  W+ + YEKL DFC+ACGKLGH MK+CD + S  PR  ++   ++   +H  +D+ +  +E  G+ +   P+     IED K+ +  P
Subjt:  DEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIHN-MVRGYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIEDNKVTNQTP

TXG51627.1 hypothetical protein EZV62_024151 [Acer yangbiense]7.7e-0529.15Show/hide
Query:  PIFSKQQIEDNKVTNQT------PKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAARCPERNENF---KLECSGVGNPRTLRVLRHVVGNHN
        P   + + E+  +  Q+       K+SN    K   + +  E IS       +QPN     + +  P    N+   KLE SG G   ++  L  V    +
Subjt:  PIFSKQQIEDNKVTNQT------PKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAARCPERNENF---KLECSGVGNPRTLRVLRHVVGNHN

Query:  PIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACI-TENDCRWRFTGIYN--------NTMKALEEISSHDKDAFMEKV-------------------
         IG       GGLM+ W KE  VT++S S+GHIDA I  E+  RWRF+G+Y         N+ + L  +S  + D F + +                   
Subjt:  PIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACI-TENDCRWRFTGIYN--------NTMKALEEISSHDKDAFMEKV-------------------

Query:  -------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAF---DHRPIL
               I ER+DRF  N   +L    FE + V+ + F   DHRPIL
Subjt:  -------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAF---DHRPIL

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]3.7e-0728.95Show/hide
Query:  GVGNPRTLRVLRHVVGNHNP---------------------------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITENDCRWRFTGIYNN--
        G+GNP T R LR++V    P                           + +    + GGLML W  +++V I S S GHID+ IT+    WRFTG Y N  
Subjt:  GVGNPRTLRVLRHVVGNHNP---------------------------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITENDCRWRFTGIYNN--

Query:  ------TMKALEEISS------------HDKDAFMEKV--------------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAFDHRPILA
              + K LE ++             ++  +  EK+              I ERLDRF++N  M     + +V  ++ ++ DHRPILA
Subjt:  ------TMKALEEISS------------HDKDAFMEKV--------------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAFDHRPILA

XP_023903659.1 uncharacterized protein LOC112015491 [Quercus suber]7.7e-0537.25Show/hide
Query:  CSGVGNPRTLRVLRHVVGNHNPI-------------------------GL--PHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND--CRWRFTGIY
        C G+GN RT+R L  VV + +PI                         GL  P   + GGL+L W KE  V++ S S  HIDA + +ND   +WRFTG Y
Subjt:  CSGVGNPRTLRVLRHVVGNHNPI-------------------------GL--PHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND--CRWRFTGIY

Query:  NN
         N
Subjt:  NN

TrEMBL top hitse value%identityAlignment
A0A2N9EFF7 Uncharacterized protein2.5e-0924.35Show/hide
Query:  IDEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHN-MVRGYGVHYNLDNTIEAI-------------EMEGIHDQNEPIFSKQQIEDNKVTNQ
        + + WI + +EKL + C  CG LGH  + CD         H  + R YG     DN +                E++    + +   S+ +   N V + 
Subjt:  IDEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHN-MVRGYGVHYNLDNTIEAI-------------EMEGIHDQNEPIFSKQQIEDNKVTNQ

Query:  TPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEA----------------ARCPERNENFKLECSGVGNPRTLRVLRHVV-------------
          K  ++ GT   K  +  +    ++ +T     + +   +                A  P   +   L C G+GNP T++ L+ +V             
Subjt:  TPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEA----------------ARCPERNENFKLECSGVGNPRTLRVLRHVV-------------

Query:  --------------GNHNPIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIYNN
                      G H  +G+      GGL L W  E  V I S S  HIDA I  ND   WRFTG Y N
Subjt:  --------------GNHNPIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIYNN

A0A2N9FB16 CCHC-type domain-containing protein1.5e-0624.12Show/hide
Query:  WISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGYGVHYNLDNTIEA---IEMEGIHDQNEPIFSKQQIEDNKVTNQTPK--------ESNL
        W+   YE L  FCY CG+LGH   +C      R         +G          A      EG+   +E   S    +    T   P          S  
Subjt:  WISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGYGVHYNLDNTIEA---IEMEGIHDQNEPIFSKQQIEDNKVTNQTPK--------ESNL

Query:  GGTKHEKQDDIDESISKIVCKTVS-----------QPNIDQLEEAARCPERNENFKLECSGVGNPRTLRVLRHVVGNHNP--------------------
        G        D  E +  ++CK  S           + ++  ++E    P       L C G+GNP+T+  L ++V    P                    
Subjt:  GGTKHEKQDDIDESISKIVCKTVS-----------QPNIDQLEEAARCPERNENFKLECSGVGNPRTLRVLRHVVGNHNP--------------------

Query:  -------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIY
               +G+    Q GGL L W     + I S S  HID  + +ND  RWR TG Y
Subjt:  -------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIY

A0A2N9FI47 CCHC-type domain-containing protein2.3e-0725.84Show/hide
Query:  WISVTYEKLLDFCYACGKLGHMMKDCDSD-SSPRKKI-----------------HNMVR-------GYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIE
        W+   YE L  FCY CG LGH   DC ++ SS R  +                 H + R       G G   N  N+ E    +G          + +IE
Subjt:  WISVTYEKLLDFCYACGKLGHMMKDCDSD-SSPRKKI-----------------HNMVR-------GYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIE

Query:  DNKVTNQTPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAARCPERNENFKLECSGVGNPRTLRVLRHVVGNHNP-----------------
           V NQ  +      ++H +  D+ ES+     + +  P+    + A   P   + F L C GVG+  T+R L  +V   +P                 
Subjt:  DNKVTNQTPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEAARCPERNENFKLECSGVGNPRTLRVLRHVVGNHNP-----------------

Query:  ----------IGLPHGNQVGGLMLPWKET-DVTIMSNSLGHIDA-CITENDCRWRFTGIYNNTMKAL
                   G+      GGL L W+ +  V I S S+ HIDA  + E++ +WR TG Y +  + L
Subjt:  ----------IGLPHGNQVGGLMLPWKET-DVTIMSNSLGHIDA-CITENDCRWRFTGIYNNTMKAL

A0A2N9HIV4 Reverse transcriptase domain-containing protein2.5e-0924.35Show/hide
Query:  IDEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHN-MVRGYGVHYNLDNTIEAI-------------EMEGIHDQNEPIFSKQQIEDNKVTNQ
        + + WI + +EKL + C  CG LGH  + CD         H  + R YG     DN +                E++    + +   S+ +   N V + 
Subjt:  IDEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHN-MVRGYGVHYNLDNTIEAI-------------EMEGIHDQNEPIFSKQQIEDNKVTNQ

Query:  TPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEA----------------ARCPERNENFKLECSGVGNPRTLRVLRHVV-------------
          K  ++ GT   K  +  +    ++ +T     + +   +                A  P   +   L C G+GNP T++ L+ +V             
Subjt:  TPKESNLGGTKHEKQDDIDESISKIVCKTVSQPNIDQLEEA----------------ARCPERNENFKLECSGVGNPRTLRVLRHVV-------------

Query:  --------------GNHNPIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIYNN
                      G H  +G+      GGL L W  E  V I S S  HIDA I  ND   WRFTG Y N
Subjt:  --------------GNHNPIGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITEND-CRWRFTGIYNN

A0A6J1DUG8 uncharacterized protein LOC1110241351.8e-0728.95Show/hide
Query:  GVGNPRTLRVLRHVVGNHNP---------------------------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITENDCRWRFTGIYNN--
        G+GNP T R LR++V    P                           + +    + GGLML W  +++V I S S GHID+ IT+    WRFTG Y N  
Subjt:  GVGNPRTLRVLRHVVGNHNP---------------------------IGLPHGNQVGGLMLPW-KETDVTIMSNSLGHIDACITENDCRWRFTGIYNN--

Query:  ------TMKALEEISS------------HDKDAFMEKV--------------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAFDHRPILA
              + K LE ++             ++  +  EK+              I ERLDRF++N  M     + +V  ++ ++ DHRPILA
Subjt:  ------TMKALEEISS------------HDKDAFMEKV--------------ILERLDRFMMNIKMDLLSSSFEVLQVDFIAFDHRPILA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGATGAGAAATGGATTTCAGTTACGTACGAGAAACTCCTTGACTTCTGCTATGCGTGTGGAAAACTGGGCCACATGATGAAGGATTGTGATTCAGACTCTAGCCC
GAGGAAGAAGATCCACAATATGGTCCGTGGCTATGGGGTCCATTACAATCTCGACAACACGATAGAGGCAATTGAGATGGAAGGGATTCACGACCAAAATGAGCCGATCT
TTTCTAAACAGCAAATAGAGGACAACAAAGTTACTAATCAAACCCCGAAGGAGTCAAATTTGGGAGGTACCAAGCACGAAAAACAAGATGATATTGATGAATCAATTAGC
AAAATAGTGTGTAAGACAGTATCCCAACCAAACATTGATCAATTGGAGGAGGCTGCTCGATGTCCCGAACGCAATGAAAATTTTAAGTTGGAATGTTCGGGGGTTGGGAA
CCCTCGAACATTAAGAGTTCTACGCCACGTAGTGGGCAACCACAATCCAATTGGTCTTCCTCATGGAAACCAAGTCGGTGGATTGATGTTACCTTGGAAGGAGACAGATG
TTACAATTATGTCTAACTCTTTGGGACATATTGATGCTTGCATCACAGAGAATGATTGTAGATGGAGATTTACTGGGATCTACAACAATACTATGAAGGCTTTAGAGGAG
ATATCTTCACATGACAAAGACGCCTTCATGGAGAAGGTCATTTTAGAACGACTAGATCGGTTTATGATGAATATTAAGATGGATCTTCTAAGTTCCTCATTTGAGGTACT
TCAAGTGGATTTCATAGCTTTTGATCATAGACCTATTTTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGATGAGAAATGGATTTCAGTTACGTACGAGAAACTCCTTGACTTCTGCTATGCGTGTGGAAAACTGGGCCACATGATGAAGGATTGTGATTCAGACTCTAGCCC
GAGGAAGAAGATCCACAATATGGTCCGTGGCTATGGGGTCCATTACAATCTCGACAACACGATAGAGGCAATTGAGATGGAAGGGATTCACGACCAAAATGAGCCGATCT
TTTCTAAACAGCAAATAGAGGACAACAAAGTTACTAATCAAACCCCGAAGGAGTCAAATTTGGGAGGTACCAAGCACGAAAAACAAGATGATATTGATGAATCAATTAGC
AAAATAGTGTGTAAGACAGTATCCCAACCAAACATTGATCAATTGGAGGAGGCTGCTCGATGTCCCGAACGCAATGAAAATTTTAAGTTGGAATGTTCGGGGGTTGGGAA
CCCTCGAACATTAAGAGTTCTACGCCACGTAGTGGGCAACCACAATCCAATTGGTCTTCCTCATGGAAACCAAGTCGGTGGATTGATGTTACCTTGGAAGGAGACAGATG
TTACAATTATGTCTAACTCTTTGGGACATATTGATGCTTGCATCACAGAGAATGATTGTAGATGGAGATTTACTGGGATCTACAACAATACTATGAAGGCTTTAGAGGAG
ATATCTTCACATGACAAAGACGCCTTCATGGAGAAGGTCATTTTAGAACGACTAGATCGGTTTATGATGAATATTAAGATGGATCTTCTAAGTTCCTCATTTGAGGTACT
TCAAGTGGATTTCATAGCTTTTGATCATAGACCTATTTTAGCTTAA
Protein sequenceShow/hide protein sequence
MIDEKWISVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGYGVHYNLDNTIEAIEMEGIHDQNEPIFSKQQIEDNKVTNQTPKESNLGGTKHEKQDDIDESIS
KIVCKTVSQPNIDQLEEAARCPERNENFKLECSGVGNPRTLRVLRHVVGNHNPIGLPHGNQVGGLMLPWKETDVTIMSNSLGHIDACITENDCRWRFTGIYNNTMKALEE
ISSHDKDAFMEKVILERLDRFMMNIKMDLLSSSFEVLQVDFIAFDHRPILA