; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g02490 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g02490
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr3:1875170..1880633
RNA-Seq ExpressionMoc03g02490
SyntenyMoc03g02490
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]4.5e-1862Show/hide
Query:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
        +SAS VDHLPLKTLAI PSL LALYA VKYSSQLNDLQLLHGNH+EHA         V+ L +                RILGSN++SL LVVSDYYDCQ
Subjt:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]3.5e-3168.1Show/hide
Query:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
        +SASC+ HLPLKTLAI PSL LA+YA VKYSSQLNDLQLL GNH+  A RTT DKVV + LRVRELIDYLEIIGITT+ RILGS+ +SLALV SDYYD +
Subjt:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ

Query:  VMFVDHSAESMSLWVP
        V     +  +M+  +P
Subjt:  VMFVDHSAESMSLWVP
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like2.2e-1862Show/hide
Query:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
        +SAS VDHLPLKTLAI PSL LALYA VKYSSQLNDLQLLHGNH+EHA         V+ L +                RILGSN++SL LVVSDYYDCQ
Subjt:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.7e-3168.1Show/hide
Query:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ
        +SASC+ HLPLKTLAI PSL LA+YA VKYSSQLNDLQLL GNH+  A RTT DKVV + LRVRELIDYLEIIGITT+ RILGS+ +SLALV SDYYD +
Subjt:  TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ

Query:  VMFVDHSAESMSLWVP
        V     +  +M+  +P
Subjt:  VMFVDHSAESMSLWVP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTACCGGGGAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAGCTGTGAAGAAGAAGGTTGTTGCTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGT
CGTGGGTATGCAAGAGAAAAGTGGTGATGGTGGGATAAGAGAGATGGAGAGAAGAAGATATGGTGATGAGATAATGTATGATATAGATGGATTCAGCTTGACACTAGGCT
TCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGCTTCGACCTCGACTTG
GATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTCAACCAAATGATAATGCAATCGA
CCTGGCTTTAACAACAGTCTTCGACCTCGACTTGGATCGGATTCGATTTAACCAAATGATAAAAGGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGAT
TGAGGTCTCTGAGAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATCCTATCGTGGAGTTTGTCAGAATATGAGGCTAAGCGAGACACA
TCTAGGTCAATTCAAACAAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCCGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTC
TCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGATCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACGGGAGCTAATAGATT
ACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATAAAAACTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGTAATGTTTGTGGAT
CATTCTGCAGAGTCAATGAGTTTATGGGTACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACTACCGGGGAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAGCTGTGAAGAAGAAGGTTGTTGCTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGT
CGTGGGTATGCAAGAGAAAAGTGGTGATGGTGGGATAAGAGAGATGGAGAGAAGAAGATATGGTGATGAGATAATGTATGATATAGATGGATTCAGCTTGACACTAGGCT
TCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGCTTCGACCTCGACTTG
GATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTCAACCAAATGATAATGCAATCGA
CCTGGCTTTAACAACAGTCTTCGACCTCGACTTGGATCGGATTCGATTTAACCAAATGATAAAAGGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGAT
TGAGGTCTCTGAGAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATCCTATCGTGGAGTTTGTCAGAATATGAGGCTAAGCGAGACACA
TCTAGGTCAATTCAAACAAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCCGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTC
TCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGATCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACGGGAGCTAATAGATT
ACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATAAAAACTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGTAATGTTTGTGGAT
CATTCTGCAGAGTCAATGAGTTTATGGGTACCGTAG
Protein sequenceShow/hide protein sequence
MHYRGGDRRSASGLGRSCEEEGCCCCRSRRSLASSEVVGMQEKSGDGGIREMERRRYGDEIMYDIDGFSLTLGFDLDLDRVRFNQMIKCDGPGFNNRLRPRLGSGFDLDL
DRVRFNRMIKCKGPGFNNRLRPRLGSGSIQPNDNAIDLALTTVFDLDLDRIRFNQMIKGDGPGFNNRLRPRLGLRSLRGFLIRPQRPFKVSLNHDILSWSLSEYEAKRDT
SRSIQTSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQVMFVD
HSAESMSLWVP