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Moc03g02870 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g02870
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:2187145..2191895
RNA-Seq ExpressionMoc03g02870
SyntenyMoc03g02870
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]6.2e-2950.36Show/hide
Query:  NILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQGQPEE
        +I + SDSQL+V Q+KEE+Q ++PRM KYLS+VR+ L QF  YE+ Q+PR++N NADALA+LA+AYETDL R+VPVEIL  PSI   + M++D    P  
Subjt:  NILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQGQPEE

Query:  NWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        +W  P++++ K   L   K E +++ RRAAR+ L++  L
Subjt:  NWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]1.7e-6391.67Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKEEFQARE RM KYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLA  YETDLGRTVPVEILL PSI+AQEAMDID+Q
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQPEENWKS LIKY KDGILPTEKIEAQQLQ+RAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]3.5e-6493.06Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEI QIPRAQNV+ADALARLAA YETDLGRTVPVEIL EPSI+AQEAMDIDNQ
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQ EEN KSPLIKY KDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]4.5e-6492.36Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKE+FQARE RMAKYLSQVRNQLDQFSKYEIRQIP AQNVNAD LARLA AYETDLGRTVPVEIL  PSI+AQEAMDIDNQ
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQPEENWKSPLIKY KDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]1.9e-5475.64Show/hide
Query:  WRRLWGRYSKTSFVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPS
        +  L  R     ++ V+NILILSDSQLIV QVKEEFQAREPRMAKYLS+V++QL QFSK+EIRQIP  QNVNADALARLAAAY TDLGRT+ VEILLEPS
Subjt:  WRRLWGRYSKTSFVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPS

Query:  IKAQEAMDIDNQGQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        IKAQE MDID Q Q EENW S LIKY KDGILP E IE QQLQR+AARYVLKD++L
Subjt:  IKAQEAMDIDNQGQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

TrEMBL top hitse value%identityAlignment
A0A6J1D7J6 Ribonuclease H3.0e-2950.36Show/hide
Query:  NILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQGQPEE
        +I + SDSQL+V Q+KEE+Q ++PRM KYLS+VR+ L QF  YE+ Q+PR++N NADALA+LA+AYETDL R+VPVEIL  PSI   + M++D    P  
Subjt:  NILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQGQPEE

Query:  NWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        +W  P++++ K   L   K E +++ RRAAR+ L++  L
Subjt:  NWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

A0A6J1DJC7 Ribonuclease H8.3e-6491.67Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKEEFQARE RM KYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLA  YETDLGRTVPVEILL PSI+AQEAMDID+Q
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQPEENWKS LIKY KDGILPTEKIEAQQLQ+RAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

A0A6J1DVC6 Ribonuclease H3.7e-6493.06Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEI QIPRAQNV+ADALARLAA YETDLGRTVPVEIL EPSI+AQEAMDIDNQ
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQ EEN KSPLIKY KDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

A0A6J1DZU0 Ribonuclease H2.2e-6492.36Show/hide
Query:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ
        +V VRNILILSDSQLIVGQVKE+FQARE RMAKYLSQVRNQLDQFSKYEIRQIP AQNVNAD LARLA AYETDLGRTVPVEIL  PSI+AQEAMDIDNQ
Subjt:  FVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPSIKAQEAMDIDNQ

Query:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        GQPEENWKSPLIKY KDGILPTEKIEAQQLQRRAARYVLKDDNL
Subjt:  GQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

A0A6J1E1Q5 uncharacterized protein LOC1110256239.2e-5575.64Show/hide
Query:  WRRLWGRYSKTSFVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPS
        +  L  R     ++ V+NILILSDSQLIV QVKEEFQAREPRMAKYLS+V++QL QFSK+EIRQIP  QNVNADALARLAAAY TDLGRT+ VEILLEPS
Subjt:  WRRLWGRYSKTSFVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEILLEPS

Query:  IKAQEAMDIDNQGQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL
        IKAQE MDID Q Q EENW S LIKY KDGILP E IE QQLQR+AARYVLKD++L
Subjt:  IKAQEAMDIDNQGQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGGTAGTGAACCGGAGGACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACGATACAGCAAAACGAGTTTCGTTGTGGTCAGGAACATACTAATACT
TAGTGATTCACAGCTGATTGTGGGTCAGGTGAAAGAGGAGTTCCAGGCTAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAGAAACCAGCTCGACCAGTTCTCAA
AATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACGCCGATGCGTTAGCTCGACTAGCTGCGGCTTATGAAACCGACTTAGGCAGAACTGTACCGGTCGAGATT
CTACTCGAGCCAAGCATAAAAGCTCAGGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATATTTTAAAGATGGGATCCT
GCCTACTGAAAAGATAGAGGCCCAGCAGCTACAACGACGAGCGGCCAGATATGTGCTTAAAGACGACAATCTGCCATTGGCAAAAGCCAAGTGGGTTAGAAACCCGAGAG
TAAACCCTGAGGGCAGAAAACGAGGAAAGCGACCAGAGGGAAGCCCACTGAGCCACGAAGGGCTCGGCCCCGACCCGGTGCTCGGCCCCGACCCGGTGCTCGGCCCCGAC
CCGGTGCTCGGTCCCGACCCGGGGCTCGGTCCCGAGCCGTGCTCGGCCCACGGCCCAGCCAGTGATCCCCCGTCTTCGATCGACGATGTCGCCCAGGCCCTGCAACGTTG
GTATCAGAGCACCAAAGAGTCGTGGGCTTTTGGAAATGGCGGGAAAGAAAAAAATGTTCCTCCCGTGGGATATTTGTCGCTCGTTGGAAAAGAGACGGAAGATGCTGCCG
TCCTCTCTACACGATCCACAACCACCCTATTGTTGATGGTTGAGGGGGCTATTGAAAACCTCCAGCGAAATGTGGTAGAGATTCGACAAATTTTGAACGTAATTGTGGAT
AAGTTGGATTCTCTTCACCTGCATCAAGAACAACCAAGTTTGAATCCAGGGAAGGAACAAGGGATCATAATTGGGCCTGATGCTCAACAACCAGCTCCAATATTACATCA
AGAATCCCTCCCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGGTAGTGAACCGGAGGACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACGATACAGCAAAACGAGTTTCGTTGTGGTCAGGAACATACTAATACT
TAGTGATTCACAGCTGATTGTGGGTCAGGTGAAAGAGGAGTTCCAGGCTAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAGAAACCAGCTCGACCAGTTCTCAA
AATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACGCCGATGCGTTAGCTCGACTAGCTGCGGCTTATGAAACCGACTTAGGCAGAACTGTACCGGTCGAGATT
CTACTCGAGCCAAGCATAAAAGCTCAGGAAGCCATGGATATCGACAATCAAGGGCAACCAGAAGAAAACTGGAAGAGCCCTTTGATCAAATATTTTAAAGATGGGATCCT
GCCTACTGAAAAGATAGAGGCCCAGCAGCTACAACGACGAGCGGCCAGATATGTGCTTAAAGACGACAATCTGCCATTGGCAAAAGCCAAGTGGGTTAGAAACCCGAGAG
TAAACCCTGAGGGCAGAAAACGAGGAAAGCGACCAGAGGGAAGCCCACTGAGCCACGAAGGGCTCGGCCCCGACCCGGTGCTCGGCCCCGACCCGGTGCTCGGCCCCGAC
CCGGTGCTCGGTCCCGACCCGGGGCTCGGTCCCGAGCCGTGCTCGGCCCACGGCCCAGCCAGTGATCCCCCGTCTTCGATCGACGATGTCGCCCAGGCCCTGCAACGTTG
GTATCAGAGCACCAAAGAGTCGTGGGCTTTTGGAAATGGCGGGAAAGAAAAAAATGTTCCTCCCGTGGGATATTTGTCGCTCGTTGGAAAAGAGACGGAAGATGCTGCCG
TCCTCTCTACACGATCCACAACCACCCTATTGTTGATGGTTGAGGGGGCTATTGAAAACCTCCAGCGAAATGTGGTAGAGATTCGACAAATTTTGAACGTAATTGTGGAT
AAGTTGGATTCTCTTCACCTGCATCAAGAACAACCAAGTTTGAATCCAGGGAAGGAACAAGGGATCATAATTGGGCCTGATGCTCAACAACCAGCTCCAATATTACATCA
AGAATCCCTCCCTATTTAA
Protein sequenceShow/hide protein sequence
MRGSEPEDRNPRINNWRRLWGRYSKTSFVVVRNILILSDSQLIVGQVKEEFQAREPRMAKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLAAAYETDLGRTVPVEI
LLEPSIKAQEAMDIDNQGQPEENWKSPLIKYFKDGILPTEKIEAQQLQRRAARYVLKDDNLPLAKAKWVRNPRVNPEGRKRGKRPEGSPLSHEGLGPDPVLGPDPVLGPD
PVLGPDPGLGPEPCSAHGPASDPPSSIDDVAQALQRWYQSTKESWAFGNGGKEKNVPPVGYLSLVGKETEDAAVLSTRSTTTLLLMVEGAIENLQRNVVEIRQILNVIVD
KLDSLHLHQEQPSLNPGKEQGIIIGPDAQQPAPILHQESLPI