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Moc03g03340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g03340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:2528883..2529233
RNA-Seq ExpressionMoc03g03340
SyntenyMoc03g03340
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS38896.1 hypothetical protein Acr_00g0060030 [Actinidia rufa]1.1e-2755.83Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILA
        MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G LVLR+V     + + G L P WEGP+++  + RPGTY L 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILA

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L+HPWNAEHLK+YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]1.9e-2956.52Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+ RVE+++  TN +  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G L L++V  HV AL+P WEGP+ +  +VRP  Y+L+DL G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAE L+ YY
Subjt:  VLAHPWNAEHLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]6.2e-3669.52Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP++RVE+YE   NE+ELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHP
        +L+HP
Subjt:  VLAHP

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]1.9e-3259.13Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+ RVE+++   N + LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L+DL G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAEHL+ YY
Subjt:  VLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]3.1e-4373.28Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYYP
        VLAHPWNAEHLKRYYP
Subjt:  VLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A6J1DP99 uncharacterized protein K02A2.6-like3.0e-3669.52Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP++RVE+YE   NE+ELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHP
        +L+HP
Subjt:  VLAHP

A0A6J1DS38 uncharacterized protein LOC1110230179.3e-3056.52Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+ RVE+++  TN +  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G L L++V  HV AL+P WEGP+ +  +VRP  Y+L+DL G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAE L+ YY
Subjt:  VLAHPWNAEHLKRYY

A0A6J1DWM2 Ribonuclease H9.0e-3359.13Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+ RVE+++   N + LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L+DL G 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYY
         L HPWNAEHL+ YY
Subjt:  VLAHPWNAEHLKRYY

A0A6J1DXL9 uncharacterized protein LOC1110254481.5e-4373.28Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD
        MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGD

Query:  VLAHPWNAEHLKRYYP
        VLAHPWNAEHLKRYYP
Subjt:  VLAHPWNAEHLKRYYP

A0A7J0DQA8 Ribonuclease H5.1e-2855.83Show/hide
Query:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILA
        MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G LVLR+V     + + G L P WEGP+++  + RPGTY L 
Subjt:  MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILA

Query:  DLKGDVLAHPWNAEHLKRYY
        DL G  L+HPWNAEHLK+YY
Subjt:  DLKGDVLAHPWNAEHLKRYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGC
GGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAGCAC
CTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTGACAGAGTAGAGCATTACGAGCCTACGACAAATGAGGATGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGC
GGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTG
ATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAGCAC
CTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MPSDRVEHYEPTTNEDELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAHPWNAEH
LKRYYP