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Moc03g03430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g03430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:2581018..2584806
RNA-Seq ExpressionMoc03g03430
SyntenyMoc03g03430
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]3.8e-1981.13Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        +K+Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]2.8e-0654.24Show/hide
Query:  LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQDPKERRR
        L +  E   A +V V ILDN SI EPDL+E++ PE SWMDPIV+FI+ N PQD K  ++
Subjt:  LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQDPKERRR

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]2.7e-1780.77Show/hide
Query:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        K+Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

XP_022152854.1 uncharacterized protein LOC111020479 [Momordica charantia]6.2e-3051.35Show/hide
Query:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQSPSRSHRSSNQQ
        MVQPANSTNTADRR LAAN  HQREVGA VVEGQGH+ L TEPL RSARIT PVLPPAHP                             PS+        
Subjt:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQSPSRSHRSSNQQ

Query:  AESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQD
        AESS NP+TP GVITREEFDQL+ + DAQVEALKA+CE+KE+S    + L  LS S  D++E   P       +  +     P+D
Subjt:  AESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQD

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]8.5e-0334.62Show/hide
Query:  RTSKKGARGPAPAPTRQSPSR-SHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEA-LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS
        RT+ KG +      +R SP   S  S + +  S+   +   G   +E     +   D+   A L +  E   A  V +EILDN SI EPD++E+D P  S
Subjt:  RTSKKGARGPAPAPTRQSPSR-SHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEA-LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS

Query:  WMDPIVDFIRGNSPQDPKERRRKVQTHVGA
        WMDPIV+FI+G   Q  KE  +  +  +G+
Subjt:  WMDPIVDFIRGNSPQDPKERRRKVQTHVGA

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]1.0e-1653.45Show/hide
Query:  RGRTSKKGARGPAPAPTRQSPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS
        RG + +KG          QSPSRSHRSSNQQAESS NP TPAGVITREEFDQLRG+LDAQVEALKAKCEQKE S    ++ ++   S  D++E   P   
Subjt:  RGRTSKKGARGPAPAPTRQSPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS

Query:  WMDPIVDFIRGNSPQD
            +  +     P+D
Subjt:  WMDPIVDFIRGNSPQD

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]1.9e-3147.55Show/hide
Query:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQ------------
        MVQP +STNT DRR L AND HQREVGA VVEGQ H+GL TEP  RSARIT P L PAH P+  KA RGRG  S++   G APAP+R+            
Subjt:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQ------------

Query:  ----------------------------------------------------SPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAK
                                                            SPS SH++SNQQAESS NPV P GVITREEFDQL+ + DAQVE LKA+
Subjt:  ----------------------------------------------------SPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAK

Query:  CEQK
        CE K
Subjt:  CEQK

TrEMBL top hitse value%identityAlignment
A0A6J1CSJ1 Ribonuclease H1.8e-1981.13Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        +K+Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

A0A6J1CSJ1 Ribonuclease H1.4e-0654.24Show/hide
Query:  LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQDPKERRR
        L +  E   A +V V ILDN SI EPDL+E++ PE SWMDPIV+FI+ N PQD K  ++
Subjt:  LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQDPKERRR

A0A6J1CSJ1 Ribonuclease H1.3e-1780.77Show/hide
Query:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        K+Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

A0A6J1DHB3 uncharacterized protein LOC1110204793.0e-3051.35Show/hide
Query:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQSPSRSHRSSNQQ
        MVQPANSTNTADRR LAAN  HQREVGA VVEGQGH+ L TEPL RSARIT PVLPPAHP                             PS+        
Subjt:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQSPSRSHRSSNQQ

Query:  AESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQD
        AESS NP+TP GVITREEFDQL+ + DAQVEALKA+CE+KE+S    + L  LS S  D++E   P       +  +     P+D
Subjt:  AESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQD

A0A6J1DXL9 uncharacterized protein LOC1110254484.1e-0334.62Show/hide
Query:  RTSKKGARGPAPAPTRQSPSR-SHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEA-LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS
        RT+ KG +      +R SP   S  S + +  S+   +   G   +E     +   D+   A L +  E   A  V +EILDN SI EPD++E+D P  S
Subjt:  RTSKKGARGPAPAPTRQSPSR-SHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEA-LKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS

Query:  WMDPIVDFIRGNSPQDPKERRRKVQTHVGA
        WMDPIV+FI+G   Q  KE  +  +  +G+
Subjt:  WMDPIVDFIRGNSPQDPKERRRKVQTHVGA

A0A6J1DXL9 uncharacterized protein LOC1110254485.0e-1753.45Show/hide
Query:  RGRTSKKGARGPAPAPTRQSPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS
        RG + +KG          QSPSRSHRSSNQQAESS NP TPAGVITREEFDQLRG+LDAQVEALKAKCEQKE S    ++ ++   S  D++E   P   
Subjt:  RGRTSKKGARGPAPAPTRQSPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESS

Query:  WMDPIVDFIRGNSPQD
            +  +     P+D
Subjt:  WMDPIVDFIRGNSPQD

A0A6J1DZJ1 uncharacterized protein LOC1110257389.4e-3247.55Show/hide
Query:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQ------------
        MVQP +STNT DRR L AND HQREVGA VVEGQ H+GL TEP  RSARIT P L PAH P+  KA RGRG  S++   G APAP+R+            
Subjt:  MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQ------------

Query:  ----------------------------------------------------SPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAK
                                                            SPS SH++SNQQAESS NPV P GVITREEFDQL+ + DAQVE LKA+
Subjt:  ----------------------------------------------------SPSRSHRSSNQQAESSRNPVTPAGVITREEFDQLRGQLDAQVEALKAK

Query:  CEQK
        CE K
Subjt:  CEQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAACCCGCAAACTCGACCAATACGGCAGATCGAAGGACCCTAGCTGCCAACGATGCCCACCAGAGGGAGGTCGGAGCAGCAGTGGTAGAGGGGCAAGGTCACGA
CGGCCTAGCAACAGAACCCCTCCGCAGGTCGGCACGAATCACCGCGCCTGTTCTACCACCTGCGCACCCCCCAAGGATATCCAAGGCCACCCGTGGCCGAGGTAGAACCT
CTAAGAAGGGCGCCCGGGGTCCAGCCCCGGCCCCGACAAGACAGTCACCATCCCGCTCACACAGGAGCTCCAACCAGCAGGCTGAATCCTCTCGCAACCCAGTAACTCCT
GCAGGAGTGATTACAAGGGAGGAGTTCGACCAGCTGAGGGGCCAGCTCGACGCTCAGGTGGAGGCCTTAAAGGCCAAATGTGAGCAGAAAGAAGCATCAGCGGTCCCTGT
CGAGATCTTAGATAATCTCTCGATCTCAGAGCCAGATCTGATAGAGATCGACGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTAGGGGCAATTCACCAC
AAGACCCCAAGGAGCGCAGAAGGAAGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATA
TTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAACCCGCAAACTCGACCAATACGGCAGATCGAAGGACCCTAGCTGCCAACGATGCCCACCAGAGGGAGGTCGGAGCAGCAGTGGTAGAGGGGCAAGGTCACGA
CGGCCTAGCAACAGAACCCCTCCGCAGGTCGGCACGAATCACCGCGCCTGTTCTACCACCTGCGCACCCCCCAAGGATATCCAAGGCCACCCGTGGCCGAGGTAGAACCT
CTAAGAAGGGCGCCCGGGGTCCAGCCCCGGCCCCGACAAGACAGTCACCATCCCGCTCACACAGGAGCTCCAACCAGCAGGCTGAATCCTCTCGCAACCCAGTAACTCCT
GCAGGAGTGATTACAAGGGAGGAGTTCGACCAGCTGAGGGGCCAGCTCGACGCTCAGGTGGAGGCCTTAAAGGCCAAATGTGAGCAGAAAGAAGCATCAGCGGTCCCTGT
CGAGATCTTAGATAATCTCTCGATCTCAGAGCCAGATCTGATAGAGATCGACGCTCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTAGGGGCAATTCACCAC
AAGACCCCAAGGAGCGCAGAAGGAAGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATA
TTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCATGA
Protein sequenceShow/hide protein sequence
MVQPANSTNTADRRTLAANDAHQREVGAAVVEGQGHDGLATEPLRRSARITAPVLPPAHPPRISKATRGRGRTSKKGARGPAPAPTRQSPSRSHRSSNQQAESSRNPVTP
AGVITREEFDQLRGQLDAQVEALKAKCEQKEASAVPVEILDNLSISEPDLIEIDAPESSWMDPIVDFIRGNSPQDPKERRRKVQTHVGALDPTWEGPFEVKGIVRPGTYI
LADLKGDVLAHPWNAEHLKRYYP