; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g03500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g03500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr3:2620383..2628425
RNA-Seq ExpressionMoc03g03500
SyntenyMoc03g03500
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]1.5e-0827.89Show/hide
Query:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSR-SI
        ++++  I + +C     +    +S+  V+F+ +  +++ EA+A+  GL L +++G+ P + E++S +   L++  +    EVG L+S++     SS  S 
Subjt:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSR-SI

Query:  RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIVDEQTL
        +  F  R  N VAH L++LAL   + +VW+EE P  I+  +  +++L
Subjt:  RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIVDEQTL

XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]1.9e-0831.21Show/hide
Query:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSIR
        +DNQV +     A+  +  G + +           +D AEAL  + GL +A+  G R ++ E ++L  F  L +   + S  G ++ +I R      S+ 
Subjt:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSIR

Query:  FSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIV
        FS T R+GN VAH+LA++  +    +VW+EE PL I+ I++
Subjt:  FSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIV

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]1.7e-0943.52Show/hide
Query:  AEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSI--RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLII
        AE LA +EG+ LAI  G+ P   ET+S   F LL    +D SE+G L S+I R  +SS  I   FSF +REGN+ AH LAR+ +      VWVEE    +
Subjt:  AEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSI--RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLII

Query:  SLIIVDEQ
        S +I  ++
Subjt:  SLIIVDEQ

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.1e-1134.44Show/hide
Query:  PPDRSEYLGGPAQKGEHSDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVG
        PPD+  Y          SD    + + I     N  G + + +         +D AEA+   EGL LA  +GV P++ ET+S   F L  QP +DLSE G
Subjt:  PPDRSEYLGGPAQKGEHSDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVG

Query:  ALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPL
         ++         S    F+F  REGN  AH LAR AL  R   +W+E+ PL
Subjt:  ALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]4.1e-1145.79Show/hide
Query:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRS--IRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGP
        +DW E  A+ EG+ LA+  G      ET+SL  F LL     D SEVG L S I +  +SS +  + FSFTHR GN  AH LA+LALT    ++WVEE P
Subjt:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRS--IRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGP

Query:  LIISLII
          IS ++
Subjt:  LIISLII

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077758.4e-1043.52Show/hide
Query:  AEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSI--RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLII
        AE LA +EG+ LAI  G+ P   ET+S   F LL    +D SE+G L S+I R  +SS  I   FSF +REGN+ AH LAR+ +      VWVEE    +
Subjt:  AEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSI--RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLII

Query:  SLIIVDEQ
        S +I  ++
Subjt:  SLIIVDEQ

A0A6J1CDQ4 uncharacterized protein LOC1110105334.6e-0839.13Show/hide
Query:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRV
        +D AEALA  EGL +A+  G+ PI+ ET+SL  + L  +  + LS+ G+++  +     +   + +SFT R GN +AH LAR AL  + N V
Subjt:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRV

A0A6J1CIF1 uncharacterized protein LOC1110112375.3e-1234.44Show/hide
Query:  PPDRSEYLGGPAQKGEHSDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVG
        PPD+  Y          SD    + + I     N  G + + +         +D AEA+   EGL LA  +GV P++ ET+S   F L  QP +DLSE G
Subjt:  PPDRSEYLGGPAQKGEHSDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVG

Query:  ALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPL
         ++         S    F+F  REGN  AH LAR AL  R   +W+E+ PL
Subjt:  ALLSNIHRRCISSRSIRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPL

A0A6J1DBJ7 uncharacterized protein LOC1110189732.0e-1145.79Show/hide
Query:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRS--IRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGP
        +DW E  A+ EG+ LA+  G      ET+SL  F LL     D SEVG L S I +  +SS +  + FSFTHR GN  AH LA+LALT    ++WVEE P
Subjt:  MDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRS--IRFSFTHREGNNVAHQLARLALTRRLNRVWVEEGP

Query:  LIISLII
          IS ++
Subjt:  LIISLII

V4UMR3 RNase H domain-containing protein (Fragment)7.1e-0927.89Show/hide
Query:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSR-SI
        ++++  I + +C     +    +S+  V+F+ +  +++ EA+A+  GL L +++G+ P + E++S +   L++  +    EVG L+S++     SS  S 
Subjt:  SDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSR-SI

Query:  RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIVDEQTL
        +  F  R  N VAH L++LAL   + +VW+EE P  I+  +  +++L
Subjt:  RFSFTHREGNNVAHQLARLALTRRLNRVWVEEGPLIISLIIVDEQTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTTCTTGGAACGAATGATGCGGGATATGGGGTTTACCGAGTCGTGGGTACAATTAATCAGTCTTTGTTTGAGCATGGTTACATATTCCTTCAATGTGAACGGAG
AACATGTGGGCATGTTATTTCGAGTTGGGGACTTCGCCAAGGCGGAATACATTTGGTTTCATTCGTGATAGAGTTTGGCATCATCTTCAAGGATGGAAAGGCCGCCTCTT
CTCTACTGGGGGTTCGGTCTTTGCAACGTCTTCCTGTCTATAGTAGAGTTTGTGATTTGTTTACAGCTTTGGCGAATATCGATTGGCTCAGCAGCAGAATTTGTTGTTTG
TATCGTCCTCTTCTTCAAGGGACACCCTTCTGTAATGGTGGAAAGTCGTTCTGGTTGAACTCGCAGTTTACTCACCTTCGACACTCTTGGCCTGTCTCGTTTATGTCCTT
CTTACTTTCTAATTTGCAGGGGAGAGTCCATTGGCATGGGTCCTTTGGGCCTACTGGGAAGTTGGGCGAGACACTATCTGCTACATTTTCGATCAGTGATAGCGGTTCAT
TCTCCTGTTGGGTCTTTGTGTACAAGGCGGAGTTTGTGCAGATGATTGCAGCTCGAACTCGGCCTCCGGATCGATCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAG
CACTCCGACAATCAAGTCAGTATAGCTTTAACAATATGTGCTTTAGCTTCAAATTTATGTGGCTCTTTATCCTCCCTTTCTGTTGTCCTCTTCAATCCGGAGTTTCACAT
GGATTGGGCAGAGGCTTTGGCGATCAAGGAGGGGTTGGCGTTGGCAATTAATATGGGTGTTCGCCCGATTATGCCGGAAACTAATTCCTTACACTATTTTCGGCTATTGG
ATCAACCTATGGATGATTTATCAGAGGTTGGTGCTCTCCTCTCAAATATTCATCGACGGTGTATTTCCTCGCGCTCCATTAGATTCAGCTTCACCCATCGGGAAGGAAAT
AACGTTGCGCACCAGTTGGCTCGTCTTGCTTTAACTAGACGTTTGAATAGAGTTTGGGTTGAGGAAGGACCTTTAATCATTTCACTTATTATTGTTGATGAACAAACTTT
ATCAGCGCAGATCCCAAAGGTTAGAAATAGCGTGGAAGAATCTGAACTCTCCACGTGTCCCATACAAAAGTCCAAGAGTTTGAGTAAAGTAATGGCGTGTGGTAACTTTC
TGGAACCGGCCGCAGTGGATTGCGACCCGATGGAGCGAAAAACTGGGAGGCAGAGTATTGGGAACACGTGCGCACGTGCGATGTACAAGCGTGTGATACGGAAACTGACT
GATGCCAGCTGTGACGTACTTTGGCACCTTACATGCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTTCTTGGAACGAATGATGCGGGATATGGGGTTTACCGAGTCGTGGGTACAATTAATCAGTCTTTGTTTGAGCATGGTTACATATTCCTTCAATGTGAACGGAG
AACATGTGGGCATGTTATTTCGAGTTGGGGACTTCGCCAAGGCGGAATACATTTGGTTTCATTCGTGATAGAGTTTGGCATCATCTTCAAGGATGGAAAGGCCGCCTCTT
CTCTACTGGGGGTTCGGTCTTTGCAACGTCTTCCTGTCTATAGTAGAGTTTGTGATTTGTTTACAGCTTTGGCGAATATCGATTGGCTCAGCAGCAGAATTTGTTGTTTG
TATCGTCCTCTTCTTCAAGGGACACCCTTCTGTAATGGTGGAAAGTCGTTCTGGTTGAACTCGCAGTTTACTCACCTTCGACACTCTTGGCCTGTCTCGTTTATGTCCTT
CTTACTTTCTAATTTGCAGGGGAGAGTCCATTGGCATGGGTCCTTTGGGCCTACTGGGAAGTTGGGCGAGACACTATCTGCTACATTTTCGATCAGTGATAGCGGTTCAT
TCTCCTGTTGGGTCTTTGTGTACAAGGCGGAGTTTGTGCAGATGATTGCAGCTCGAACTCGGCCTCCGGATCGATCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAG
CACTCCGACAATCAAGTCAGTATAGCTTTAACAATATGTGCTTTAGCTTCAAATTTATGTGGCTCTTTATCCTCCCTTTCTGTTGTCCTCTTCAATCCGGAGTTTCACAT
GGATTGGGCAGAGGCTTTGGCGATCAAGGAGGGGTTGGCGTTGGCAATTAATATGGGTGTTCGCCCGATTATGCCGGAAACTAATTCCTTACACTATTTTCGGCTATTGG
ATCAACCTATGGATGATTTATCAGAGGTTGGTGCTCTCCTCTCAAATATTCATCGACGGTGTATTTCCTCGCGCTCCATTAGATTCAGCTTCACCCATCGGGAAGGAAAT
AACGTTGCGCACCAGTTGGCTCGTCTTGCTTTAACTAGACGTTTGAATAGAGTTTGGGTTGAGGAAGGACCTTTAATCATTTCACTTATTATTGTTGATGAACAAACTTT
ATCAGCGCAGATCCCAAAGGTTAGAAATAGCGTGGAAGAATCTGAACTCTCCACGTGTCCCATACAAAAGTCCAAGAGTTTGAGTAAAGTAATGGCGTGTGGTAACTTTC
TGGAACCGGCCGCAGTGGATTGCGACCCGATGGAGCGAAAAACTGGGAGGCAGAGTATTGGGAACACGTGCGCACGTGCGATGTACAAGCGTGTGATACGGAAACTGACT
GATGCCAGCTGTGACGTACTTTGGCACCTTACATGCCATTAA
Protein sequenceShow/hide protein sequence
MIFLGTNDAGYGVYRVVGTINQSLFEHGYIFLQCERRTCGHVISSWGLRQGGIHLVSFVIEFGIIFKDGKAASSLLGVRSLQRLPVYSRVCDLFTALANIDWLSSRICCL
YRPLLQGTPFCNGGKSFWLNSQFTHLRHSWPVSFMSFLLSNLQGRVHWHGSFGPTGKLGETLSATFSISDSGSFSCWVFVYKAEFVQMIAARTRPPDRSEYLGGPAQKGE
HSDNQVSIALTICALASNLCGSLSSLSVVLFNPEFHMDWAEALAIKEGLALAINMGVRPIMPETNSLHYFRLLDQPMDDLSEVGALLSNIHRRCISSRSIRFSFTHREGN
NVAHQLARLALTRRLNRVWVEEGPLIISLIIVDEQTLSAQIPKVRNSVEESELSTCPIQKSKSLSKVMACGNFLEPAAVDCDPMERKTGRQSIGNTCARAMYKRVIRKLT
DASCDVLWHLTCH