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Moc03g03960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g03960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:2938022..2939136
RNA-Seq ExpressionMoc03g03960
SyntenyMoc03g03960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61548.1 hypothetical protein VITISV_043524 [Vitis vinifera]1.1e-2435.46Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMKAL   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAM+ AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKG-NAEMNYTRKQQHKNNRDSGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKTSK
         LK + I D+ L++E R +  G+ S S+        SA+ ++ +G  A  + T  ++   N  +G        D+  V + +GS   V G+ DV +    
Subjt:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKG-NAEMNYTRKQQHKNNRDSGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKTSK

Query:  ETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
         +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  ETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

CAN78464.1 hypothetical protein VITISV_025101 [Vitis vinifera]9.9e-2635.43Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMKAL   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAMK AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKE-TRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSS----NGEVECDYDSVRIGNGSVSKVRGIEDVCLK
         LK + I D+ L++E  R   G+ S S         SA+ ++ +G        K   K N D  ++       V  D+  V + +G    V G+ DV + 
Subjt:  NLKISAICDVALSKE-TRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSS----NGEVECDYDSVRIGNGSVSKVRGIEDVCLK

Query:  TSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
            +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  TSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

RVW17147.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.1e-2435.71Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMK L   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAM+ AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK-LGKISASTS--EVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKTS
         LK + I D+ L++E R +  G+ S S S   +E R        N+G A  + T  ++   N  +G        D+  V + +GS   V G+ DV +   
Subjt:  NLKISAICDVALSKETRMK-LGKISASTS--EVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKTS

Query:  KETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
          +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  KETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

RVW44991.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.7e-2533.99Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMKAL   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAM+  V NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRD----SGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKT
         LK + I D+ L++E R +    ++ +        SA+ ++ +G        K   K N D    + +    V  D+  V + +GS   V G+ DV +  
Subjt:  NLKISAICDVALSKETRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRD----SGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKT

Query:  SKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
           +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  SKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

RVX13003.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.7e-2535.25Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE     LMKAL   YEKPS N K+ L  K F++ M E  SV  H+NKF  I N+L  + I  D+E++A+ +L   P+SWEAM+  V NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNG-----------EVECDYDSVRIGNGSVSKVRG
         LK + I D+ L++E R +  G+ S S         SA+ ++ +G        K   K N D  S+N             V+ D+  V + +GS   V G
Subjt:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNG-----------EVECDYDSVRIGNGSVSKVRG

Query:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
        + DV +     +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

TrEMBL top hitse value%identityAlignment
A0A2N9GZ72 Uncharacterized protein1.4e-2534.24Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        +++ V KET    LM AL   YEKPS N K+ L  K F++ M EG +V  H+N+F  I N+L  + I+ D+E++A+ +L   P+SWEAM+ AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMKLGKISASTSE---VENRVESAMVVQNKGNAEM----------NYTRKQQHKNN------RDSGSSNGEVEC----------
         LK   I D+ LS+E R +   I  +  +    ENR +       KG   +             +K +H +N       DS +++  V            
Subjt:  NLKISAICDVALSKETRMKLGKISASTSE---VENRVESAMVVQNKGNAEM----------NYTRKQQHKNN------RDSGSSNGEVEC----------

Query:  DYDSVRIGNGSVSKVRGIEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY
        D+ +V++GN S SK+ GI DVC+KT+     +L++V ++P   FNL+S   +D  GY
Subjt:  DYDSVRIGNGSVSKVRGIEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY

A0A438EB12 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-2633.99Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMKAL   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAM+  V NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRD----SGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKT
         LK + I D+ L++E R +    ++ +        SA+ ++ +G        K   K N D    + +    V  D+  V + +GS   V G+ DV +  
Subjt:  NLKISAICDVALSKETRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRD----SGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKT

Query:  SKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
           +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  SKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

A0A438JVL4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-2635.25Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE     LMKAL   YEKPS N K+ L  K F++ M E  SV  H+NKF  I N+L  + I  D+E++A+ +L   P+SWEAM+  V NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNG-----------EVECDYDSVRIGNGSVSKVRG
         LK + I D+ L++E R +  G+ S S         SA+ ++ +G        K   K N D  S+N             V+ D+  V + +GS   V G
Subjt:  NLKISAICDVALSKETRMK-LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNG-----------EVECDYDSVRIGNGSVSKVRG

Query:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
        + DV +     +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

A0A7N2RFD8 Integrase catalytic domain-containing protein2.4e-2533.72Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMK L   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAM+ AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK-----LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNGEVEC-------DYDSVRIGNGSVSKVRG
         LK + I D+ L++E R +      G  SA   E   R        N  N+    ++ +    NR    S  +V+C       D+  V + +GS   V G
Subjt:  NLKISAICDVALSKETRMK-----LGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNGEVEC-------DYDSVRIGNGSVSKVRG

Query:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
        + DV +     +  +L  + +IP    NL+SVG+LDD+G+        +  T+ A+V A G
Subjt:  IEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

A5AYT3 Integrase catalytic domain-containing protein4.8e-2635.43Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V++ V KE    +LMKAL   YEKPS N K+ L  K F++ M E  SV  H+N+F  I N+L  + I  D+E++A+ +L   P+SWEAMK AV NS G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKE-TRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSS----NGEVECDYDSVRIGNGSVSKVRGIEDVCLK
         LK + I D+ L++E  R   G+ S S         SA+ ++ +G        K   K N D  ++       V  D+  V + +G    V G+ DV + 
Subjt:  NLKISAICDVALSKE-TRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSS----NGEVECDYDSVRIGNGSVSKVRGIEDVCLK

Query:  TSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG
            +  +L  V +IP    NL+SVG+LDD+G+        +  T+ ARV A G
Subjt:  TSKETESVLRDVGYIPSFIFNLLSVGKLDDDGY------NRFTETENARVAADG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1424.29Show/hide
Query:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN
        V+N++ ++T A+ +   LE  Y   +   K+ L  + + +HM EGT+  SH+N F  ++ +L  + +KI+EE KA+ LL   P S++ + T +L+  G  
Subjt:  VSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDN

Query:  NLKISAICDVALSKETRMK------------------------LGKISA------------------------------------STSEVENRVESAMVV
         +++  +    L  E   K                         G+  A                                     TS  +N   +A +V
Subjt:  NLKISAICDVALSKETRMK------------------------LGKISA------------------------------------STSEVENRVESAMVV

Query:  QNKGNAEM--NYTRKQQHKNNR------DSGSSNGE----------VECDYDSVRIGNGSVSKVRGIEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGK
        QN  N  +  N   +  H +        D+ +S+            V  D+ +V++GN S SK+ GI D+C+KT+     VL+DV ++P    NL+S   
Subjt:  QNKGNAEM--NYTRKQQHKNNR------DSGSSNGE----------VECDYDSVRIGNGSVSKVRGIEDVCLKTSKETESVLRDVGYIPSFIFNLLSVGK

Query:  LDDDGYNRFTETENARV
        LD DGY  +   +  R+
Subjt:  LDDDGYNRFTETENARV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTATCTAACCTCGTGGCGAAAGAGACGATAGCAAAAGAACTGATGAAGGCTTTAGAAGACAGGTATGAGAAACCTTCTACCAATACTAAAATACTTCTA
TGGACGAAGTATTTCGATATCCACATGGAAGAGGGAACCTCGGTGAATTCCCACATTAATAAGTTCACCGATATATTGAACAAACTAGAAGGGATGTGCATCAAA
ATTGATGAGGAGGTGAAGGCTATGAGGTTGCTGACATATTCGCCTGACAGTTGGGAGGCGATGAAGACCGCGGTGTTGAATTCATTAGGAGATAATAATCTGAAA
ATTTCAGCTATTTGTGATGTCGCCTTATCTAAGGAAACCAGGATGAAATTGGGGAAAATTTCTGCATCTACTTCAGAGGTAGAAAACAGGGTTGAATCAGCTATG
GTAGTTCAGAACAAGGGAAATGCCGAGATGAATTACACAAGGAAGCAGCAACATAAAAATAACAGGGATAGTGGGAGTTCCAACGGGGAAGTAGAGTGTGATTAT
GACTCAGTGAGGATTGGGAATGGGAGTGTCTCCAAGGTGAGAGGAATTGAAGATGTTTGTTTGAAGACAAGTAAAGAGACCGAGTCGGTTTTGCGAGACGTCGGT
TATATTCCTAGCTTCATATTTAATTTGTTATCTGTAGGGAAGCTAGACGACGATGGCTACAACAGGTTCACTGAGACAGAGAATGCACGGGTAGCTGCAGATGGT
TCAGGGCGAGACCTTAGAGGACCAGCAACATTGATGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTATCTAACCTCGTGGCGAAAGAGACGATAGCAAAAGAACTGATGAAGGCTTTAGAAGACAGGTATGAGAAACCTTCTACCAATACTAAAATACTTCTA
TGGACGAAGTATTTCGATATCCACATGGAAGAGGGAACCTCGGTGAATTCCCACATTAATAAGTTCACCGATATATTGAACAAACTAGAAGGGATGTGCATCAAA
ATTGATGAGGAGGTGAAGGCTATGAGGTTGCTGACATATTCGCCTGACAGTTGGGAGGCGATGAAGACCGCGGTGTTGAATTCATTAGGAGATAATAATCTGAAA
ATTTCAGCTATTTGTGATGTCGCCTTATCTAAGGAAACCAGGATGAAATTGGGGAAAATTTCTGCATCTACTTCAGAGGTAGAAAACAGGGTTGAATCAGCTATG
GTAGTTCAGAACAAGGGAAATGCCGAGATGAATTACACAAGGAAGCAGCAACATAAAAATAACAGGGATAGTGGGAGTTCCAACGGGGAAGTAGAGTGTGATTAT
GACTCAGTGAGGATTGGGAATGGGAGTGTCTCCAAGGTGAGAGGAATTGAAGATGTTTGTTTGAAGACAAGTAAAGAGACCGAGTCGGTTTTGCGAGACGTCGGT
TATATTCCTAGCTTCATATTTAATTTGTTATCTGTAGGGAAGCTAGACGACGATGGCTACAACAGGTTCACTGAGACAGAGAATGCACGGGTAGCTGCAGATGGT
TCAGGGCGAGACCTTAGAGGACCAGCAACATTGATGGCCTGA
Protein sequenceShow/hide protein sequence
MGVSNLVAKETIAKELMKALEDRYEKPSTNTKILLWTKYFDIHMEEGTSVNSHINKFTDILNKLEGMCIKIDEEVKAMRLLTYSPDSWEAMKTAVLNSLGDNNLK
ISAICDVALSKETRMKLGKISASTSEVENRVESAMVVQNKGNAEMNYTRKQQHKNNRDSGSSNGEVECDYDSVRIGNGSVSKVRGIEDVCLKTSKETESVLRDVG
YIPSFIFNLLSVGKLDDDGYNRFTETENARVAADGSGRDLRGPATLMA