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Moc03g04030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr3:2968007..2972842
RNA-Seq ExpressionMoc03g04030
SyntenyMoc03g04030
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151295.1 uncharacterized protein LOC111019259 [Momordica charantia]8.4e-5576Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAT++LN ENYKQ KSNLN IL+I+DLRFVLQE+ P APA +ATVAV   YD+WIKANDKA+VYIL SIS+VLAKKHE+ VTAKEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF Q SSQA+HE LKFVYNSCMKEG S+REHVLNLM+HFN+ E+N  + D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.9e-6790Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLA QRLNGENYKQWKSNLNTIL+IDDL+FVLQEDCPQA APNATVAVR AYD+WIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPSSQARHEALKF+YNS MKEGSS+REHVLNLMVHFNV ESN  V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

XP_022154837.1 uncharacterized protein LOC111022000 [Momordica charantia]8.7e-5291.53Show/hide
Query:  MIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFVYNSCMKEGSSMRE
        MIDDLRFVLQEDCPQAPAPNAT+AVRNAYD+WIKANDKAKVYIL+SISDVLAKKHEDTVTAKEIMDSLQSMF QPSSQARHEALKFVYNS MK+GSS+RE
Subjt:  MIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFVYNSCMKEGSSMRE

Query:  HVLNLMVHFNVVESNRVV
        HVLNLMVHFNV ESN  V
Subjt:  HVLNLMVHFNVVESNRVV

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]2.1e-6183.33Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL  Q+LN ENYKQWKSN+NTILMIDDLRFVLQEDCPQAPAPNATVAVRN YD+WIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPSSQARHEAL  +YNS MK+ SS+REHVLNLMVHFNV ESN  V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]3.6e-6688Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLA Q+LNGENY+QWKSNLNTIL+IDDLRFVLQEDCPQAP  NATVAVRNAYD+WIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPS QARHEALKFVYNS MKEGSS+REHVLNLMVHFNV ESN +V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

TrEMBL top hitse value%identityAlignment
A0A6J1DAT1 uncharacterized protein LOC1110192594.1e-5576Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAT++LN ENYKQ KSNLN IL+I+DLRFVLQE+ P APA +ATVAV   YD+WIKANDKA+VYIL SIS+VLAKKHE+ VTAKEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF Q SSQA+HE LKFVYNSCMKEG S+REHVLNLM+HFN+ E+N  + D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

A0A6J1DFZ2 uncharacterized protein LOC1110200959.4e-6890Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLA QRLNGENYKQWKSNLNTIL+IDDL+FVLQEDCPQA APNATVAVR AYD+WIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPSSQARHEALKF+YNS MKEGSS+REHVLNLMVHFNV ESN  V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

A0A6J1DMS3 uncharacterized protein LOC1110220004.2e-5291.53Show/hide
Query:  MIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFVYNSCMKEGSSMRE
        MIDDLRFVLQEDCPQAPAPNAT+AVRNAYD+WIKANDKAKVYIL+SISDVLAKKHEDTVTAKEIMDSLQSMF QPSSQARHEALKFVYNS MK+GSS+RE
Subjt:  MIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFAQPSSQARHEALKFVYNSCMKEGSSMRE

Query:  HVLNLMVHFNVVESNRVV
        HVLNLMVHFNV ESN  V
Subjt:  HVLNLMVHFNVVESNRVV

A0A6J1DW68 uncharacterized protein LOC1110246371.0e-6183.33Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL  Q+LN ENYKQWKSN+NTILMIDDLRFVLQEDCPQAPAPNATVAVRN YD+WIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPSSQARHEAL  +YNS MK+ SS+REHVLNLMVHFNV ESN  V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

A0A6J1DWL0 uncharacterized protein LOC1110247341.8e-6688Show/hide
Query:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLA Q+LNGENY+QWKSNLNTIL+IDDLRFVLQEDCPQAP  NATVAVRNAYD+WIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD
        MF QPS QARHEALKFVYNS MKEGSS+REHVLNLMVHFNV ESN +V D
Subjt:  MFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATGCAAAGAATTGCACAACGCTGTTCTATTAACCTAGCTCGAACCCGGTCCTTGGCTCGACCTGAACCCAAGAGTGAACCTGCACAAGAGGGTAAACTCTCCGA
CGCTCAAGTCAGTATAGATCGGATTCCGTATTTAGTTCGAGTCGTTCGTGGCATCGGATTGGGTGAAAAGTTTCAGAAAACAGCGAAGAAGACGAAGCAGACTGCGCAGA
CAGCGCCATGGCGCTATGCAGCAGTGCCATGGCGCTGCGGGACAGCACATAGCGCCACGGCGCAGCACTGTAGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTGTCC
CGGGTGTCTTTCGACGCGGTTCCGAGGCTCCGGTTCGCGGATTATTGGGGTGGACCTCTGAGCATGTCTACTTCTATTATTGCACTCTTAGCCACGCAAAGACTTAATGG
CGAAAATTACAAACAATGGAAGTCAAACCTAAACACTATTCTCATGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCACCTGCGCCTAACGCCACTG
TGGCGGTGCGCAACGCCTATGACAAGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTC
ACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGCACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCGTTTACAACTCCTGCATGAAAGAGGGCTC
CTCAATGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGTTGAGTCGAACAGGGTCGTCAAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTATGCAAAGAATTGCACAACGCTGTTCTATTAACCTAGCTCGAACCCGGTCCTTGGCTCGACCTGAACCCAAGAGTGAACCTGCACAAGAGGGTAAACTCTCCGA
CGCTCAAGTCAGTATAGATCGGATTCCGTATTTAGTTCGAGTCGTTCGTGGCATCGGATTGGGTGAAAAGTTTCAGAAAACAGCGAAGAAGACGAAGCAGACTGCGCAGA
CAGCGCCATGGCGCTATGCAGCAGTGCCATGGCGCTGCGGGACAGCACATAGCGCCACGGCGCAGCACTGTAGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTGTCC
CGGGTGTCTTTCGACGCGGTTCCGAGGCTCCGGTTCGCGGATTATTGGGGTGGACCTCTGAGCATGTCTACTTCTATTATTGCACTCTTAGCCACGCAAAGACTTAATGG
CGAAAATTACAAACAATGGAAGTCAAACCTAAACACTATTCTCATGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCACCTGCGCCTAACGCCACTG
TGGCGGTGCGCAACGCCTATGACAAGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTC
ACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGCACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCGTTTACAACTCCTGCATGAAAGAGGGCTC
CTCAATGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGTTGAGTCGAACAGGGTCGTCAAAGATTAG
Protein sequenceShow/hide protein sequence
MFMQRIAQRCSINLARTRSLARPEPKSEPAQEGKLSDAQVSIDRIPYLVRVVRGIGLGEKFQKTAKKTKQTAQTAPWRYAAVPWRCGTAHSATAQHCSAAALPLGAEALS
RVSFDAVPRLRFADYWGGPLSMSTSIIALLATQRLNGENYKQWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVAVRNAYDKWIKANDKAKVYILASISDVLAKKHEDTV
TAKEIMDSLQSMFAQPSSQARHEALKFVYNSCMKEGSSMREHVLNLMVHFNVVESNRVVKD