CuGenDBv2

Gene ID	Moc03g04040
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr3:2972912..2973316
RNA-Seq Expression	Moc03g04040
Synteny	Moc03g04040
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

8.1e-40

71.85

Show/hide

Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

8.1e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

8.1e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

8.1e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

8.1e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.9e-40

71.85

Show/hide

Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5A7TU93 Gag/pol protein

3.9e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5A7V4M1 Gag/pol protein

3.9e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5D3CPJ6 Gag/pol protein

3.9e-40

71.85

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Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5D3DS88 Gag/pol protein

3.9e-40

71.85

Show/hide

Query:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW
        MNK+ YTLTTLLNELQ ++SL K KGQ+GEANVATS ++F+RGS+S TKS PSSS +K +KKKK  G+G+K + AAA    K K A KG CFHCN +GHW
Subjt:  MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATS-KRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHW

Query:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KRNCPKYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KRNCPKYLAEKKKANEGKYDLLVLETCLVENDDSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATAAGCTGGAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGGTTTACCAGTCTCTTACGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACC
TCAAAGAGGTTCAACAGAGGATCGTCCTCTGAAACCAAGTCTACGCCCTCTTCTTCTAGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAA
CCTGACTCAGCTGCTGCTACCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGCGCAACTGCCCAAAG
TACTTGGCCGAGAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTAG

mRNA sequence

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Protein sequence

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MNKLEYTLTTLLNELQVYQSLTKCKGQEGEANVATSKRFNRGSSSETKSTPSSSRSKTFKKKKAAGKGSKPDSAAATQKGKVKVAEKGKCFHCNMDGHWKRNCPK
YLAEKKKANEGKYDLLVLETCLVENDDSA

Moc03g04040 (gene) of Bitter gourd (OHB3-1) v2 genome