CuGenDBv2

Gene ID	Moc03g04090
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	coiled-coil domain-containing protein 12-like
Genome location	chr3:3015464..3023035
RNA-Seq Expression	Moc03g04090
Synteny	Moc03g04090
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-67

90.91

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

XP_022155130.1 coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]

1.1e-75

100

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Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

1.1e-67

90.91

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]

1.0e-68

91.56

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Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

7.6e-69

92.21

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Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR08 Uncharacterized protein

1.1e-65

87.01

Show/hide

Query:  AMATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFV
        AMATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFRNYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFV
Subjt:  AMATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLM+EQEKQK++AEGD+ +NG E
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X1

5.3e-76

100

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Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

A0A6J1E719 coiled-coil domain-containing protein 12-like

1.6e-64

88.46

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVI---EDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDP
        MATE+DSVEQVAAARKERLRALRAAQELLN  DEK SGGEDK+NG     ED EETNLSMKFRNYVPHDKELQEGKL PP LPKFEDPVA EPPQLKEDP
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVI---EDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QN TE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

5.3e-68

90.91

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

4.8e-69

91.56

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QNGTEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

1.1e-12

37.82

Show/hide

Query:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEET--NLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVANEPPQLKEDPFV
        +E+ A  RKERL+ALR       T  +    GE +   + E+ EE   +  ++ RNYVP D++L+  ++  A PV      K +   A   P ++E    
Subjt:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEET--NLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVANEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKES--AEGDDVQNGTE
        N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L++E+ K +E   A   D   G E
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKES--AEGDDVQNGTE

Q8WUD4 Coiled-coil domain-containing protein 12

2.1e-13

37.66

Show/hide

Query:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTE--ETNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVANEPPQLKEDPFV
        +E+ A  RKERL+ALR       T  +    GE K   + E+ E  E +  ++ RNYVP D++L++ ++  A PV      K +   A   P ++E    
Subjt:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTE--ETNLSMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVANEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE
        N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L++E+ K +E +    V   TE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTE

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

1.8e-44

67.57

Show/hide

Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPP--QLKEDPF
        MA+E++S+EQ AAARKE L+ALRAAQEL           E K++G  E  EE   +MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLM+EQEK++E AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACCTCCTCCTTGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCTCGTAAAGAGAGATTGAGAGCTCTCAGAGCTGCTCAGGAATTGTTA
AACACGCCGGATGAGAAGACTTCTGGAGGCGAGGATAAAGATAATGGTGTTATTGAAGATACTGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTCCCT
CATGATAAAGAGCTTCAGGAGGGTAAACTTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTGCCAATGAACCTCCACAATTAAAAGAGGATCCATTTGTA
AATATTGCCCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCACTATATAAGCTTATGAAG
GAACAGGAAAAGCAAAAGGAGTCAGCTGAAGGAGATGATGTCCAAAATGGTACAGAGGGATAG

mRNA sequence

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Protein sequence

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MTSSLAMATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFV
NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMKEQEKQKESAEGDDVQNGTEG

Moc03g04090 (gene) of Bitter gourd (OHB3-1) v2 genome