; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g04350 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04350
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:3230543..3233038
RNA-Seq ExpressionMoc03g04350
SyntenyMoc03g04350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ19866.1 hypothetical protein Acr_28g0005710 [Actinidia rufa]1.5e-1327.51Show/hide
Query:  QGARKAQETITLTTHFVDDTKIPVEERLDAAPGNHSNNPSKVPNEGEAHDGSGTPF---------------ADNVMAVAIPPKFKWPT----MKQYDGTE
        +G R+A  +        + +K P  +       NH ++  K+P +   ++G   P                +D VM  A     K P      K   GT 
Subjt:  QGARKAQETITLTTHFVDDTKIPVEERLDAAPGNHSNNPSKVPNEGEAHDGSGTPF---------------ADNVMAVAIPPKFKWPT----MKQYDGTE

Query:  DP--------VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR----------------DERRGRGNHPPPHEG
        D         V +F+  R  ++ A++L T+ QKE ESL +++ RFN   LKVE  +D   +  +M GLR                   + + +     E 
Subjt:  DP--------VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR----------------DERRGRGNHPPPHEG

Query:  PLANKQPDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL
            K+ + D + LH PH+DALV++  I N  V RIL+D GSS D+L +  F+ M +  ++L    TPL
Subjt:  PLANKQPDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL

XP_023894989.1 uncharacterized protein LOC112006903 [Quercus suber]7.4e-1326.41Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG
        +PF+ ++    +PPKFK P++  YDGT DP DH                              R HKR ++ LLT+ Q ENESL  +I RFN EAL V+ 
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG

Query:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------
          D   L                     TD    L+ +     R+G+  H                    PP  E                         
Subjt:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------

Query:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL
           L+ + P             D + + +H PH+DA+VI L I + +  R+LVD GSS D+L    F  M I +++L+   +PL
Subjt:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL

XP_023895777.1 uncharacterized protein LOC112007641 [Quercus suber]1.6e-1527.51Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHF--------VRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVE------------GGADG--
        +PF  ++    +PPKFK PT+  YDGT DP DH         ++GR HKR ++ LLT+ Q ENESLH +I RFN EAL V+             G +   
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHF--------VRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVE------------GGADG--

Query:  ------------------------TALTDVMVGLRDERRGRGNHPPPH--EGP-----------------------------------LANKQP------
                                 A   ++V  R        +P  H  +GP                                   L+ + P      
Subjt:  ------------------------TALTDVMVGLRDERRGRGNHPPPH--EGP-----------------------------------LANKQP------

Query:  -------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL
               D D + +H PH+DA+V+ L I + +  R+L+D GSS D+L    F  M + R+ L+  ++PL
Subjt:  -------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL

XP_023900876.1 uncharacterized protein LOC112012715 [Quercus suber]7.4e-1326.41Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG
        +PF+ ++    +PPKFK P++  YDGT DP DH                              R HKR ++ LLT+ Q ENESL  +I RFN EAL V+ 
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG

Query:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------
          D   L                     TD    L+ +     R+G+  H                    PP  E                         
Subjt:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------

Query:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL
           L+ + P             D + + +H PH+DA+VI L I + +  R+LVD GSS D+L    F  M I +++L+   +PL
Subjt:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL

XP_023902033.1 uncharacterized protein LOC112013883 [Quercus suber]7.4e-1326.41Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG
        +PF+ ++    +PPKFK P++  YDGT DP DH                              R HKR ++ LLT+ Q ENESL  +I RFN EAL V+ 
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVDHFVR--------------------------GREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEG

Query:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------
          D   L                     TD    L+ +     R+G+  H                    PP  E                         
Subjt:  GADGTAL---------------------TDVMVGLRDE-----RRGRGNH--------------------PPPHE-------------------------

Query:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL
           L+ + P             D + + +H PH+DA+VI L I + +  R+LVD GSS D+L    F  M I +++L+   +PL
Subjt:  -GPLANKQP-------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPL

TrEMBL top hitse value%identityAlignment
A0A2N9EIW1 Retrotrans_gag domain-containing protein5.6e-1424.04Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDP--------------VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMV
        +PF  ++    +PP+FK P ++ +DGT+D               +DHF+ G+   RP T+LL+++Q E ESL  Y+ RFN EA++++   +   LT  MV
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDP--------------VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMV

Query:  GLRDE-------------------RRGRGN-------------------------------HPPPHEGP---LANKQP----------------------
        GLR                      R  G+                                PP  +GP     N +P                      
Subjt:  GLRDE-------------------RRGRGN-------------------------------HPPPHEGP---LANKQP----------------------

Query:  -------------------------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLK
                                       + D +  HQPH++ALVI + I +    R+++D GSSVD+L L  +  M +D+E+L+
Subjt:  -------------------------------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLK

A0A2N9ESE9 Integrase catalytic domain-containing protein2.0e-1627.71Show/hide
Query:  GSGTPFADNVMAVAIPPKFKWPTMKQYDGTEDPVD-------------------------------------------------------HFVRGREHKR
        G+ +PF   V +  +P KF+ PT++ +DG++DP+D                                                       HF+ G+   R
Subjt:  GSGTPFADNVMAVAIPPKFKWPTMKQYDGTEDPVD-------------------------------------------------------HFVRGREHKR

Query:  PATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLRDERRGRGNHPPPHEGPLANKQPDPDEQSLHQPHNDALVIALPIVNIQVHRILV
        P T+LL ++QKE E L  Y+ RFN E L VEG  D   +T+    L D               L     + D + +  PH+DALV+ L I      R+L+
Subjt:  PATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLRDERRGRGNHPPPHEGPLANKQPDPDEQSLHQPHNDALVIALPIVNIQVHRILV

Query:  DGGSSVDVLALQMFDVMSIDRERLKGCTTPL
        D GS  D++ L  F  M I +++L+   TPL
Subjt:  DGGSSVDVLALQMFDVMSIDRERLKGCTTPL

A0A2N9HN36 Uncharacterized protein2.7e-1629.65Show/hide
Query:  PFADNVMAVAIPPKFKWPTMKQYDGTEDP---VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR---------
        PF   V    +P KFK         T+     +D+F+ GR   RPA YLL +RQ+E ESL  Y+ RFN EA++++  ++  ALT    GLR         
Subjt:  PFADNVMAVAIPPKFKWPTMKQYDGTEDP---VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR---------

Query:  --------------------------------------DERRGRGNHPPPHEGPLANKQ----PDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSS
                                              ++RR   +   P +    + Q     + D + +HQPH++ALV+ + IV+    R+L+D GSS
Subjt:  --------------------------------------DERRGRGNHPPPHEGPLANKQ----PDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSS

Query:  VDVLALQMFDVMSIDRERLKGCTTPL
        VD++ L  +  M ID+ERL+    PL
Subjt:  VDVLALQMFDVMSIDRERLKGCTTPL

A0A2N9IR10 Uncharacterized protein2.7e-1629.65Show/hide
Query:  PFADNVMAVAIPPKFKWPTMKQYDGTEDP---VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR---------
        PF   V    +P KFK         T+     +D+F+ GR   RPA YLL +RQ+E ESL  Y+ RFN EA++++  ++  ALT    GLR         
Subjt:  PFADNVMAVAIPPKFKWPTMKQYDGTEDP---VDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLR---------

Query:  --------------------------------------DERRGRGNHPPPHEGPLANKQ----PDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSS
                                              ++RR   +   P +    + Q     + D + +HQPH++ALV+ + IV+    R+L+D GSS
Subjt:  --------------------------------------DERRGRGNHPPPHEGPLANKQ----PDPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSS

Query:  VDVLALQMFDVMSIDRERLKGCTTPL
        VD++ L  +  M ID+ERL+    PL
Subjt:  VDVLALQMFDVMSIDRERLKGCTTPL

A0A2N9J3I5 Ribonuclease H2.5e-1425Show/hide
Query:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVD-------------------------------------------------------HFVRGREHKRPAT
        +PF + V++  +P KF+ P+++ +DGT+DP+D                                                       HF  G+   RP T
Subjt:  TPFADNVMAVAIPPKFKWPTMKQYDGTEDPVD-------------------------------------------------------HFVRGREHKRPAT

Query:  YLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGL------RDERRGR-----------GNHPPPHEGPL----------------------
        +LL ++Q+E E+L  Y+ RFN E L V+G  D      +  G       RD+R GR            + P P  G +                      
Subjt:  YLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGL------RDERRGR-----------GNHPPPHEGPL----------------------

Query:  ----------ANKQP----------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPLP
                  ANK P            D + +  PH+DALV+ L I      R+L+D GSS D++ L  F  M I +++L+   TPLP
Subjt:  ----------ANKQP----------DPDEQSLHQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCGAACGATAGGCAAGCTGTTCTAGAGGAAACCATGAACTCCGAATGGATGCAACACCCTAACCTGTCCCCGAGACATGTGACCCCTCAGCTGACTTTT
CGATGTCCGACTCAGGGTGCTAGAAAGGCACAGGAAACCATCACGTTGACTACCCACTTCGTAGACGACACAAAAATCCCTGTTGAGGAACGTCTAGATGCCGCG
CCAGGCAATCATAGTAACAACCCCAGCAAGGTGCCAAATGAAGGAGAAGCCCATGATGGATCGGGCACCCCATTCGCAGATAATGTCATGGCAGTAGCCATACCA
CCAAAATTCAAATGGCCAACCATGAAACAATATGATGGCACTGAGGATCCAGTGGATCACTTTGTAAGAGGGCGGGAGCACAAAAGACCAGCTACTTATCTATTA
ACGCTCCGGCAAAAAGAGAACGAAAGCCTTCATGAGTATATTGTTCGCTTTAATAATGAAGCCCTCAAGGTGGAGGGAGGCGCTGATGGAACCGCCTTAACTGAT
GTCATGGTCGGACTACGAGATGAAAGAAGAGGAAGGGGCAATCACCCCCCTCCCCATGAAGGACCGCTAGCAAACAAGCAGCCCGACCCAGACGAACAAAGTTTG
CACCAACCACACAACGATGCATTGGTAATCGCACTACCCATTGTCAATATCCAAGTACATCGCATACTAGTGGATGGAGGCAGTTCGGTTGATGTCTTAGCATTG
CAGATGTTTGATGTTATGAGTATCGATCGAGAAAGATTGAAGGGATGCACTACTCCTTTGCCTATTGCTCGCGAATGTTATTATACGGTTCTACACCTAAAATCT
ACCTTGTCAAACCCTAAACCAACAAAACCGAGTTTTGATACAGAAAAGGCAGAAAAGTCTTCTAAAAACCCGGTGCTCGCCCCGCTCGGTCGAGACGAGGATATG
CTGCCAAGTCAGTTAAAGAATCTCAGCAGTGCACGAGGAGAGCCAGTGGAGGCAGTAGAGTCTGTACCCCTGCTTTCCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACCCGAACGATAGGCAAGCTGTTCTAGAGGAAACCATGAACTCCGAATGGATGCAACACCCTAACCTGTCCCCGAGACATGTGACCCCTCAGCTGACTTTT
CGATGTCCGACTCAGGGTGCTAGAAAGGCACAGGAAACCATCACGTTGACTACCCACTTCGTAGACGACACAAAAATCCCTGTTGAGGAACGTCTAGATGCCGCG
CCAGGCAATCATAGTAACAACCCCAGCAAGGTGCCAAATGAAGGAGAAGCCCATGATGGATCGGGCACCCCATTCGCAGATAATGTCATGGCAGTAGCCATACCA
CCAAAATTCAAATGGCCAACCATGAAACAATATGATGGCACTGAGGATCCAGTGGATCACTTTGTAAGAGGGCGGGAGCACAAAAGACCAGCTACTTATCTATTA
ACGCTCCGGCAAAAAGAGAACGAAAGCCTTCATGAGTATATTGTTCGCTTTAATAATGAAGCCCTCAAGGTGGAGGGAGGCGCTGATGGAACCGCCTTAACTGAT
GTCATGGTCGGACTACGAGATGAAAGAAGAGGAAGGGGCAATCACCCCCCTCCCCATGAAGGACCGCTAGCAAACAAGCAGCCCGACCCAGACGAACAAAGTTTG
CACCAACCACACAACGATGCATTGGTAATCGCACTACCCATTGTCAATATCCAAGTACATCGCATACTAGTGGATGGAGGCAGTTCGGTTGATGTCTTAGCATTG
CAGATGTTTGATGTTATGAGTATCGATCGAGAAAGATTGAAGGGATGCACTACTCCTTTGCCTATTGCTCGCGAATGTTATTATACGGTTCTACACCTAAAATCT
ACCTTGTCAAACCCTAAACCAACAAAACCGAGTTTTGATACAGAAAAGGCAGAAAAGTCTTCTAAAAACCCGGTGCTCGCCCCGCTCGGTCGAGACGAGGATATG
CTGCCAAGTCAGTTAAAGAATCTCAGCAGTGCACGAGGAGAGCCAGTGGAGGCAGTAGAGTCTGTACCCCTGCTTTCCGAATAG
Protein sequenceShow/hide protein sequence
MNPNDRQAVLEETMNSEWMQHPNLSPRHVTPQLTFRCPTQGARKAQETITLTTHFVDDTKIPVEERLDAAPGNHSNNPSKVPNEGEAHDGSGTPFADNVMAVAIP
PKFKWPTMKQYDGTEDPVDHFVRGREHKRPATYLLTLRQKENESLHEYIVRFNNEALKVEGGADGTALTDVMVGLRDERRGRGNHPPPHEGPLANKQPDPDEQSL
HQPHNDALVIALPIVNIQVHRILVDGGSSVDVLALQMFDVMSIDRERLKGCTTPLPIARECYYTVLHLKSTLSNPKPTKPSFDTEKAEKSSKNPVLAPLGRDEDM
LPSQLKNLSSARGEPVEAVESVPLLSE