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Moc03g04380 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04380
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:3274759..3285328
RNA-Seq ExpressionMoc03g04380
SyntenyMoc03g04380
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032787.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-1460.81Show/hide
Query:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK
        +D +E++FGDLLVSDK KEI  S Q+V+I E K DDSSSMPKEW+YAPSH KDLILG+ EQ   R+  +A  ++
Subjt:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK

TYK30345.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-1460.81Show/hide
Query:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK
        +D +E++FGDLLVSDK KEI  S Q+V+I E K DDSSSMPKEW+YAPSH KDLILG+ EQ   R+  +A  ++
Subjt:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK

XP_022158792.1 uncharacterized protein LOC111025259 [Momordica charantia]1.9e-1880.6Show/hide
Query:  GLLSLLSDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQ
        G ++      ERNFGDLLVSDKSKEI SSKQEVSINENKVD  SSMPKEWKYAPSH KDLILGDPEQ
Subjt:  GLLSLLSDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQ

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.9e-0538.32Show/hide
Query:  CAALGLSKFCRYNEVALAFLYTGWLSLGGLGGGLYSLRGLYWDNSCFALVF---------------FG--------------VGPIYPRFGDQIIYDDAS
        C+ LGL + C Y E ALA  +  W+ +G LGGGL S   LY D   F  +F               FG               GPI+PR GD++IYD AS
Subjt:  CAALGLSKFCRYNEVALAFLYTGWLSLGGLGGGLYSLRGLYWDNSCFALVF---------------FG--------------VGPIYPRFGDQIIYDDAS

Query:  LSRAKVL
         S AKV+
Subjt:  LSRAKVL

TrEMBL top hitse value%identityAlignment
A0A5A7SU02 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1460.81Show/hide
Query:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK
        +D +E++FGDLLVSDK KEI  S Q+V+I E K DDSSSMPKEW+YAPSH KDLILG+ EQ   R+  +A  ++
Subjt:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK

A0A5D3E4Z1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1460.81Show/hide
Query:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK
        +D +E++FGDLLVSDK KEI  S Q+V+I E K DDSSSMPKEW+YAPSH KDLILG+ EQ   R+  +A  ++
Subjt:  SDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQELKRAKLEASLEK

A0A6J1DY46 uncharacterized protein LOC1110252599.3e-1980.6Show/hide
Query:  GLLSLLSDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQ
        G ++      ERNFGDLLVSDKSKEI SSKQEVSINENKVD  SSMPKEWKYAPSH KDLILGDPEQ
Subjt:  GLLSLLSDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPKEWKYAPSHSKDLILGDPEQ

A0A6J1E271 uncharacterized protein LOC1110253249.0e-0638.32Show/hide
Query:  CAALGLSKFCRYNEVALAFLYTGWLSLGGLGGGLYSLRGLYWDNSCFALVF---------------FG--------------VGPIYPRFGDQIIYDDAS
        C+ LGL + C Y E ALA  +  W+ +G LGGGL S   LY D   F  +F               FG               GPI+PR GD++IYD AS
Subjt:  CAALGLSKFCRYNEVALAFLYTGWLSLGGLGGGLYSLRGLYWDNSCFALVF---------------FG--------------VGPIYPRFGDQIIYDDAS

Query:  LSRAKVL
         S AKV+
Subjt:  LSRAKVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCCTTTGCGGGAGGGTGGTTTAGGTGTGCGGCACTTGGCCTCTCAAAATTTTGCCGCTATAATGAAGTTGCTCTAGCTTTTCTTTACACGGGCTGGCTA
TCTTTGGGTGGCTTGGGTGGAGGTTTATATTCTCTAAGGGGATTGTATTGGGACAATTCGTGCTTCGCCTTGGTTTTTTTTGGTGTGGGTCCGATTTATCCGAGG
TTTGGTGATCAGATTATCTATGATGATGCGAGCTTGTCTCGAGCAAAGGTTTTAGTTAGGGGGTTAATGTGCCCATTTGGATTCTTTCATCGTCGGGTCTCTTTT
CGATGTCGAGTGCGTAGTGTGTGTTGCGGTCGACCCGACCTTTGTTCCTTTGTTTTCTTTGCTTTGGGTTGGTTGGAACATTCCGAAGCATTCTTTCATTGCTTG
GTTGGCGCTGTGAGGTCTGGTCTGGTATTATTGCTTGGGCTGGTTCTTCTCATTGGATTTCATATTGGTCTACTGAGCTTGCTTAGTGATTCCTTAGAAAGAAAT
TTTGGAGATTTACTTGTTAGTGACAAAAGCAAAGAGATTGCTTCAAGTAAGCAAGAGGTGAGCATAAACGAAAATAAGGTGGACGATTCTTCATCCATGCCTAAG
GAGTGGAAGTATGCTCCATCTCATTCTAAGGATTTAATCCTTGGTGATCCTGAGCAAGAACTCAAGAGGGCAAAACTTGAGGCATCGCTGGAGAAATCTAGTCAG
TGCGGCCTTGGTGGAAGTGGAGAACGGCGCTACCCTCATCGATCTGCACTATCTGAACCTACCATTAGTATTGATTCTTCTCCGTCTGACGGTACCAGGAGAGGT
GAGGACGCTAGGGTTGTGGTGGGTGCTAGCGCAGTTAGCCCTGCCTCCCTTGTAGTGGGGGTTGAGATTGCCCTTGCTCGTTCTGGACTTAGGCCCTATCGAGGA
AACCATTGCCGATTTGGTGGCTCACCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTCCTTTGCGGGAGGGTGGTTTAGGTGTGCGGCACTTGGCCTCTCAAAATTTTGCCGCTATAATGAAGTTGCTCTAGCTTTTCTTTACACGGGCTGGCTA
TCTTTGGGTGGCTTGGGTGGAGGTTTATATTCTCTAAGGGGATTGTATTGGGACAATTCGTGCTTCGCCTTGGTTTTTTTTGGTGTGGGTCCGATTTATCCGAGG
TTTGGTGATCAGATTATCTATGATGATGCGAGCTTGTCTCGAGCAAAGGTTTTAGTTAGGGGGTTAATGTGCCCATTTGGATTCTTTCATCGTCGGGTCTCTTTT
CGATGTCGAGTGCGTAGTGTGTGTTGCGGTCGACCCGACCTTTGTTCCTTTGTTTTCTTTGCTTTGGGTTGGTTGGAACATTCCGAAGCATTCTTTCATTGCTTG
GTTGGCGCTGTGAGGTCTGGTCTGGTATTATTGCTTGGGCTGGTTCTTCTCATTGGATTTCATATTGGTCTACTGAGCTTGCTTAGTGATTCCTTAGAAAGAAAT
TTTGGAGATTTACTTGTTAGTGACAAAAGCAAAGAGATTGCTTCAAGTAAGCAAGAGGTGAGCATAAACGAAAATAAGGTGGACGATTCTTCATCCATGCCTAAG
GAGTGGAAGTATGCTCCATCTCATTCTAAGGATTTAATCCTTGGTGATCCTGAGCAAGAACTCAAGAGGGCAAAACTTGAGGCATCGCTGGAGAAATCTAGTCAG
TGCGGCCTTGGTGGAAGTGGAGAACGGCGCTACCCTCATCGATCTGCACTATCTGAACCTACCATTAGTATTGATTCTTCTCCGTCTGACGGTACCAGGAGAGGT
GAGGACGCTAGGGTTGTGGTGGGTGCTAGCGCAGTTAGCCCTGCCTCCCTTGTAGTGGGGGTTGAGATTGCCCTTGCTCGTTCTGGACTTAGGCCCTATCGAGGA
AACCATTGCCGATTTGGTGGCTCACCTGAATGA
Protein sequenceShow/hide protein sequence
MYSFAGGWFRCAALGLSKFCRYNEVALAFLYTGWLSLGGLGGGLYSLRGLYWDNSCFALVFFGVGPIYPRFGDQIIYDDASLSRAKVLVRGLMCPFGFFHRRVSF
RCRVRSVCCGRPDLCSFVFFALGWLEHSEAFFHCLVGAVRSGLVLLLGLVLLIGFHIGLLSLLSDSLERNFGDLLVSDKSKEIASSKQEVSINENKVDDSSSMPK
EWKYAPSHSKDLILGDPEQELKRAKLEASLEKSSQCGLGGSGERRYPHRSALSEPTISIDSSPSDGTRRGEDARVVVGASAVSPASLVVGVEIALARSGLRPYRG
NHCRFGGSPE