; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g04390 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04390
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:3285514..3289721
RNA-Seq ExpressionMoc03g04390
SyntenyMoc03g04390
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020412827.1 uncharacterized protein LOC109947301 [Prunus persica]1.6e-5354.95Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK +LD  +G W E LP +LW+YR+T +T+TGETPFSL+FGT+AV PVEIG P+ RT  YD  TN+E L +  D + +L++    R + 
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K+R A++YD+R++PRAF++GD ++RKV   TKNP  G LGPTWEGPY + ++ +PGTY L D  G+ L HPWN +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

XP_020412969.1 uncharacterized protein LOC109947421 [Prunus persica]4.6e-5354.95Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK +LD  +G W E LP +LW+YR+T +T+TGETPFSL+FGT+AV PVEIG P+ RT  YD   N+E L +  D + +L++    R + 
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K+R A++YD+R++PRAF++GD V+RKV   TKNP  G LGPTWEGPY + ++ +PGTY L D  G+ L HPWN +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

XP_020415508.1 uncharacterized protein LOC109948021 [Prunus persica]5.0e-5254.95Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK +LD  +G W E LP +LW+YR+T +T+TGET FSL+FGT+AV PVEIG P+ RT  YD   N+E L +  D + +L++    R   
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K+R A++YD+R++PRAF+IGD V+RKV   TKNP  G LGPTWEGPY + ++ +PGTY L D  G+ L HPWN +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

XP_020415514.1 uncharacterized protein LOC109948028 [Prunus persica]1.3e-5254.4Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK +LD  +G W E LP +LW+YR+T +T+TGETPFSL+ GT+AV PVEIG P+ RT  YD   N+E L +  D +++L++    R + 
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K+R A++YD+R++PRAF++GD V+RKV   TKNP  G LGPTWEGPY + ++ +PGTY L D  G+ L HPWN +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

XP_034197324.1 uncharacterized protein LOC117612789 [Prunus dulcis]3.5e-5355.49Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK +LD  +G W E LP +LW+YR+T +T+TGETPFSL+FGT+AV PVEIG P+ RT  YD   N+E L +  D + +L++    R   
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K+R A++YD+R++PRAF++GD V+RKV   TKNPT G LGPTWEGPY + ++ +PGTY L D  G+ L HPWN +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

TrEMBL top hitse value%identityAlignment
A0A2N9GP47 Ribonuclease H1.8e-5052.75Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VE  N+ +   +K RL+  +G W EELPSILWAYR+T +  TGETPF + FG++AV+PVEIGL + RT  YD   NEE LR+  DL+ +++E  + R+  
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         +ER A+HY++R++PR   +GD+VLRKV   TKNP+ G LGP WEGPY V  + +PGTY+L D+ GR L HPWN EHL+ YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

A0A2N9GP47 Ribonuclease H1.8e-0246.94Show/hide
Query:  HQPHNDALVITLAIANARVHRILVDEGSLADMLTLRTFDEMRIGIERPR
        HQPH+DALVIT+ IA     R++VD GS AD+L L  + +M++  ++ R
Subjt:  HQPHNDALVITLAIANARVHRILVDEGSLADMLTLRTFDEMRIGIERPR

A0A6J1CM48 Ribonuclease H1.8e-5054.73Show/hide
Query:  FVAEPSIRQPKSFPVM-----TVEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEE
        F  + +IR  +S P        VEAVNKI+K  LK  L+S +G W EELP++LWAYRST KT TGE PFSLAFG + VIPV+I L S R   Y+PATN+E
Subjt:  FVAEPSIRQPKSFPVM-----TVEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEE

Query:  SLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHL
         LR+  +L+++L+E   QR+ TR++ S Q Y+  +RP+AF+ GD VLR+V  NTK  T+GVLGP WEG Y V R+A+PGT YL++  G+ L HPWNVEHL
Subjt:  SLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHL

Query:  K
        K
Subjt:  K

A0A6J1DVB6 uncharacterized protein LOC1110234369.3e-5254.4Show/hide
Query:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST
        VEAVNKIIK  LK RL+  +G WAEELP+ LWAYR+T+ T+T ETPFSL+FG+KA++PVEIGLPSPR E      N ES+++  DLL++ +E  + R + 
Subjt:  VEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMST

Query:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
         K R A++Y+++++ R F+ GD+VLRK++PNTK+ T+G   PTWEGPY VT++ + GTY L D  G+ L+HPW+ +HLK YY
Subjt:  RKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

A0A6J1DZU0 Ribonuclease H2.4e-5250.93Show/hide
Query:  AAYRTEEAREIPMKFV-AEPSIRQPKSFPVMTVEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRT
        AA+R E  RE+ +K + + P+  Q        VEAVNK+IK  LK RL+  +G WAEELP+ LWAY +T  T+TGETPFSL+FG++AV+PVEIGLPSPR 
Subjt:  AAYRTEEAREIPMKFV-AEPSIRQPKSFPVMTVEAVNKIIKICLKARLDSFQGKWAEELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRT

Query:  ENYDPATNEESLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRV
        E +    N ES+++  DLL++ +E  + R +  K R A++Y+++++ R F+ GD+VLRKV+PNTK+ T+G LGPTWEGPY  T++ + GTY L D  G+ 
Subjt:  ENYDPATNEESLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRV

Query:  LIHPWNVEHLKLYY
        L+HPW+ +HLK YY
Subjt:  LIHPWNVEHLKLYY

A0A7J0DSD2 Ribonuclease H3.5e-5144.19Show/hide
Query:  QEWEIRQIPRSENRNVDALAQLAAAYR-------------TEEAREIP----MKFVAEPSIRQPKSFPVM-----TVEAVNKIIKICLKARLDSFQGKWA
        +E++I QIPR +N+  DALA LA+ +              ++ AR+        F ++ +I    S P        V   N+ +   LKARL+  + +WA
Subjt:  QEWEIRQIPRSENRNVDALAQLAAAYR-------------TEEAREIP----MKFVAEPSIRQPKSFPVM-----TVEAVNKIIKICLKARLDSFQGKWA

Query:  EELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMV
        E LPSILWAY +T++  TGETP+S+ FGT++VIPVEIG+PS R   +D  TNE  LR+  DLL++ +E  + R +  K + A++Y+ R+R R+F  GD+V
Subjt:  EELPSILWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMV

Query:  LRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY
        LRKV  +TK P  G LGPTWEGPY V ++++PGTY+L D+ G+ L HPWN EHLK YY
Subjt:  LRKVLPNTKNPTNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCAGAACAAAGCCGATCTCATATCCCCGGGATTAGAGTCGGTTATTCATCAGCCTCATAATGATGCACTGGTCATTACGTTGGCTATAGCAAATGCT
AGAGTCCATCGCATTTTAGTGGATGAGGGAAGTTTGGCTGATATGCTCACCTTACGAACATTTGACGAAATGCGTATTGGAATAGAGCGACCTCGAAAAACCTCC
AGCAATAACATTTTTGGAACGGAGGAGCCTTCAATATCACCTTCAGTCAAACTACCAGATGAAGGAAAACACATTCGTGGGGAACCAGCAAAAGAAATTGAGAAT
GTCCCCTTAATCTCTGATAAGCAATGTGTTCGAGTAGGAGCCCAATTACAAGACAAGGATAAGCAAGAATGGGAAATTCGACAGATACCACGATCTGAGAACAGA
AATGTTGATGCACTAGCACAACTAGCCGCTGCCTATAGAACGGAAGAAGCACGGGAAATTCCCATGAAGTTCGTTGCGGAGCCAAGCATAAGACAGCCTAAAAGC
TTCCCTGTGATGACTGTGGAAGCCGTTAACAAAATCATAAAAATATGTCTAAAAGCTCGTTTGGACTCCTTCCAAGGAAAATGGGCAGAAGAGCTGCCAAGCATA
CTATGGGCATATCGATCTACAGCGAAAACCACGACAGGAGAGACCCCTTTTTCTTTAGCCTTCGGCACCAAGGCAGTGATCCCAGTCGAGATCGGGCTGCCTTCT
CCTCGGACAGAAAATTATGATCCCGCTACTAATGAAGAATCTTTAAGAATCCAGTTTGATCTGTTAAAAGACCTACAAGAAGGCGATAAACAACGAATGTCGACA
CGCAAGGAACGCAGTGCGCAACATTATGACACTCGTATGCGACCACGAGCGTTTCAAATAGGAGATATGGTTCTACGCAAAGTACTCCCTAACACCAAGAACCCA
ACAAACGGTGTCCTTGGTCCTACATGGGAAGGCCCGTATGTGGTCACTAGGCTAGCTCAACCCGGAACTTATTATTTGTCTGATGTAATGGGAAGGGTATTGATC
CATCCATGGAATGTGGAACATTTAAAATTATATTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATCAGAACAAAGCCGATCTCATATCCCCGGGATTAGAGTCGGTTATTCATCAGCCTCATAATGATGCACTGGTCATTACGTTGGCTATAGCAAATGCT
AGAGTCCATCGCATTTTAGTGGATGAGGGAAGTTTGGCTGATATGCTCACCTTACGAACATTTGACGAAATGCGTATTGGAATAGAGCGACCTCGAAAAACCTCC
AGCAATAACATTTTTGGAACGGAGGAGCCTTCAATATCACCTTCAGTCAAACTACCAGATGAAGGAAAACACATTCGTGGGGAACCAGCAAAAGAAATTGAGAAT
GTCCCCTTAATCTCTGATAAGCAATGTGTTCGAGTAGGAGCCCAATTACAAGACAAGGATAAGCAAGAATGGGAAATTCGACAGATACCACGATCTGAGAACAGA
AATGTTGATGCACTAGCACAACTAGCCGCTGCCTATAGAACGGAAGAAGCACGGGAAATTCCCATGAAGTTCGTTGCGGAGCCAAGCATAAGACAGCCTAAAAGC
TTCCCTGTGATGACTGTGGAAGCCGTTAACAAAATCATAAAAATATGTCTAAAAGCTCGTTTGGACTCCTTCCAAGGAAAATGGGCAGAAGAGCTGCCAAGCATA
CTATGGGCATATCGATCTACAGCGAAAACCACGACAGGAGAGACCCCTTTTTCTTTAGCCTTCGGCACCAAGGCAGTGATCCCAGTCGAGATCGGGCTGCCTTCT
CCTCGGACAGAAAATTATGATCCCGCTACTAATGAAGAATCTTTAAGAATCCAGTTTGATCTGTTAAAAGACCTACAAGAAGGCGATAAACAACGAATGTCGACA
CGCAAGGAACGCAGTGCGCAACATTATGACACTCGTATGCGACCACGAGCGTTTCAAATAGGAGATATGGTTCTACGCAAAGTACTCCCTAACACCAAGAACCCA
ACAAACGGTGTCCTTGGTCCTACATGGGAAGGCCCGTATGTGGTCACTAGGCTAGCTCAACCCGGAACTTATTATTTGTCTGATGTAATGGGAAGGGTATTGATC
CATCCATGGAATGTGGAACATTTAAAATTATATTACTAG
Protein sequenceShow/hide protein sequence
MANQNKADLISPGLESVIHQPHNDALVITLAIANARVHRILVDEGSLADMLTLRTFDEMRIGIERPRKTSSNNIFGTEEPSISPSVKLPDEGKHIRGEPAKEIEN
VPLISDKQCVRVGAQLQDKDKQEWEIRQIPRSENRNVDALAQLAAAYRTEEAREIPMKFVAEPSIRQPKSFPVMTVEAVNKIIKICLKARLDSFQGKWAEELPSI
LWAYRSTAKTTTGETPFSLAFGTKAVIPVEIGLPSPRTENYDPATNEESLRIQFDLLKDLQEGDKQRMSTRKERSAQHYDTRMRPRAFQIGDMVLRKVLPNTKNP
TNGVLGPTWEGPYVVTRLAQPGTYYLSDVMGRVLIHPWNVEHLKLYY