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Moc03g04400 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04400
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr3:3290329..3291168
RNA-Seq ExpressionMoc03g04400
SyntenyMoc03g04400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3490028.1 hypothetical protein F2Q69_00052966 [Brassica cretica]5.2e-0448.94Show/hide
Query:  PPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWM
        P   + TPFTD + ++ +P KF +P+IK YD TTDP DHV  +  WM
Subjt:  PPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWM
KAF3595127.1 hypothetical protein DY000_02021697 [Brassica cretica]5.2e-0448.94Show/hide
Query:  PPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWM
        P   + TPFTD + ++ +P KF +P+IK YD TTDP DHV  +  WM
Subjt:  PPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWM
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.1e-0930.11Show/hide
Query:  RDPTKGKQPREVSDESQTSPILGPRERLILGGNDRCQKKTRAWGPRNIPIPSQCFAGKEHCDTRQSLARGGRIDSNDLRNLLNHIREEGVSRNSEALRNL
        RDP KGK P E   E  T+ +     +L +GGN R  ++TR + PR           K+H   +     GG+ D +D              RNSE +   
Subjt:  RDPTKGKQPREVSDESQTSPILGPRERLILGGNDRCQKKTRAWGPRNIPIPSQCFAGKEHCDTRQSLARGGRIDSNDLRNLLNHIREEGVSRNSEALRNL

Query:  LNHNRQCQNPPEEGRPIPCNPIKNLPIDEGRVGDVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
        L+  +    P    +       ++   ++G   D+ E   ++ +PFT+ +M   +P KFK P +KQ+D TTDP+DH+D +  WMD+
Subjt:  LNHNRQCQNPPEEGRPIPCNPIKNLPIDEGRVGDVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
TrEMBL top hitse value%identityAlignment
A0A6J1DWY0 uncharacterized protein LOC1110252932.0e-0930.11Show/hide
Query:  RDPTKGKQPREVSDESQTSPILGPRERLILGGNDRCQKKTRAWGPRNIPIPSQCFAGKEHCDTRQSLARGGRIDSNDLRNLLNHIREEGVSRNSEALRNL
        RDP KGK P E   E  T+ +     +L +GGN R  ++TR + PR           K+H   +     GG+ D +D              RNSE +   
Subjt:  RDPTKGKQPREVSDESQTSPILGPRERLILGGNDRCQKKTRAWGPRNIPIPSQCFAGKEHCDTRQSLARGGRIDSNDLRNLLNHIREEGVSRNSEALRNL

Query:  LNHNRQCQNPPEEGRPIPCNPIKNLPIDEGRVGDVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
        L+  +    P    +       ++   ++G   D+ E   ++ +PFT+ +M   +P KFK P +KQ+D TTDP+DH+D +  WMD+
Subjt:  LNHNRQCQNPPEEGRPIPCNPIKNLPIDEGRVGDVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
A0A6J1E1E7 uncharacterized protein LOC1110255489.5e-0439.62Show/hide
Query:  DVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
        D+ E   ++ +PFT+ +M   +P KFK P +K +D  T+P+DH+D +  WMD+
Subjt:  DVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
A0A7J0DBQ5 Retrotrans_gag domain-containing protein9.5e-0451.16Show/hide
Query:  TPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
        TPFT +VM V +P KFK P ++ +D T DP+DH++T+   MDL
Subjt:  TPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAACAAGGCGAGCATCCCAATCCTCCTCTCATACCTAGACGCCATCAAGCCTCTTGTACTAATTGTTTGTACAACGAAGATTGGGGGAAAAACCCCCAATATGGC
CACTCAACCAGTCGATCCCCTGGTTGTTCCAAGGCAAACGCGAAGTCACCACACTCGAGTCGCCCGATATGTCCAAAGGTTAAAAGGAGACATGGCTCGAGTACTGGCTT
TGTTAACACAACAAGATCAGACTGGAACTTACGCTAGTACTTCATCTCCCACGCCCCGACGTGATCCGACAAAAGGGAAACAACCCAGGGAAGTCAGCGATGAGTCGCAA
ACAAGTCCAATCCTTGGACCACGAGAAAGGTTAATTTTAGGAGGCAATGATCGCTGTCAAAAGAAAACTAGGGCTTGGGGGCCGAGGAATATTCCAATTCCCTCACAATG
TTTTGCAGGGAAAGAACATTGTGATACTCGCCAGTCACTAGCTCGTGGCGGAAGAATTGACAGCAATGATCTTCGTAACCTTCTAAATCACATAAGAGAAGAAGGTGTCA
GCCGTAACTCAGAGGCTCTACGGAACCTATTGAATCACAACCGACAATGCCAGAATCCTCCCGAGGAAGGAAGACCCATCCCTTGCAACCCTATCAAAAATCTCCCTATC
GATGAGGGAAGAGTGGGAGATGTATATGAACCGCCCTGTGAATCTATTACCCCATTCACTGACAGTGTAATGGCTGTAATTATTCCTTCGAAATTCAAATGGCCCGCAAT
AAAGCAGTATGACTGTACCACCGATCCCATGGATCATGTAGATACCTTCAGCACATGGATGGATCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAACAAGGCGAGCATCCCAATCCTCCTCTCATACCTAGACGCCATCAAGCCTCTTGTACTAATTGTTTGTACAACGAAGATTGGGGGAAAAACCCCCAATATGGC
CACTCAACCAGTCGATCCCCTGGTTGTTCCAAGGCAAACGCGAAGTCACCACACTCGAGTCGCCCGATATGTCCAAAGGTTAAAAGGAGACATGGCTCGAGTACTGGCTT
TGTTAACACAACAAGATCAGACTGGAACTTACGCTAGTACTTCATCTCCCACGCCCCGACGTGATCCGACAAAAGGGAAACAACCCAGGGAAGTCAGCGATGAGTCGCAA
ACAAGTCCAATCCTTGGACCACGAGAAAGGTTAATTTTAGGAGGCAATGATCGCTGTCAAAAGAAAACTAGGGCTTGGGGGCCGAGGAATATTCCAATTCCCTCACAATG
TTTTGCAGGGAAAGAACATTGTGATACTCGCCAGTCACTAGCTCGTGGCGGAAGAATTGACAGCAATGATCTTCGTAACCTTCTAAATCACATAAGAGAAGAAGGTGTCA
GCCGTAACTCAGAGGCTCTACGGAACCTATTGAATCACAACCGACAATGCCAGAATCCTCCCGAGGAAGGAAGACCCATCCCTTGCAACCCTATCAAAAATCTCCCTATC
GATGAGGGAAGAGTGGGAGATGTATATGAACCGCCCTGTGAATCTATTACCCCATTCACTGACAGTGTAATGGCTGTAATTATTCCTTCGAAATTCAAATGGCCCGCAAT
AAAGCAGTATGACTGTACCACCGATCCCATGGATCATGTAGATACCTTCAGCACATGGATGGATCTGTAG
Protein sequenceShow/hide protein sequence
MSNKASIPILLSYLDAIKPLVLIVCTTKIGGKTPNMATQPVDPLVVPRQTRSHHTRVARYVQRLKGDMARVLALLTQQDQTGTYASTSSPTPRRDPTKGKQPREVSDESQ
TSPILGPRERLILGGNDRCQKKTRAWGPRNIPIPSQCFAGKEHCDTRQSLARGGRIDSNDLRNLLNHIREEGVSRNSEALRNLLNHNRQCQNPPEEGRPIPCNPIKNLPI
DEGRVGDVYEPPCESITPFTDSVMAVIIPSKFKWPAIKQYDCTTDPMDHVDTFSTWMDL