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Moc03g04420 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04420
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:3301090..3304082
RNA-Seq ExpressionMoc03g04420
SyntenyMoc03g04420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143565.1 uncharacterized protein LOC111013434 [Momordica charantia]3.3e-1234.88Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQESPRGRLRGLLDW
        Y+ S  PR   S+N+N+DALA LAS+Y TDL +++ V++L   S++E   M+ID    P   +P+ ++L  GK+P D    +++ R ++ R  LR    +
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQESPRGRLRGLLDW

Query:  SRA---------SKQN-----TETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
         R          SK++      E    +  +  R + + A+ P E L  ++APWPFAQW  +LI P P+GKG
Subjt:  SRA---------SKQN-----TETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]2.5e-1232.77Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P
        Y+ S  PR   S+N+N DALA LAS+Y  DL +++ V++L   S++E   M++D P +P   DP+ E+++ G  P+D    +++ R+             
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P

Query:  RGRLRGLLDW---------SRASKQNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
        RG    LL +          R   +    + + A D  +    +  +P E LT ++APWPFAQW  D+I P P+GKG
Subjt:  RGRLRGLLDW---------SRASKQNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]3.3e-1232.12Show/hide
Query:  SKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----PRGRL-------------
        S+N+N D LA LAS+Y TDLP+T+ V++L + S+ + + M+I     P   DP+ ++L  G +P D + AR+LRRQ +      G+L             
Subjt:  SKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----PRGRL-------------

Query:  -------------RGLLDWSRASKQNTETRVLLAY----------------DEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
                      G+      +K      V   Y                D+ +    + R+P E LT +++PWPFAQW  DLI PLPMGKG
Subjt:  -------------RGLLDWSRASKQNTETRVLLAY----------------DEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]3.2e-1530.38Show/hide
Query:  KIAREPFIASILVV-DMSKGFKGHRLDKYDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIG
        K+AR   +  +L++ D      G+R     GS+   V  S+N+N DALA LAS+Y TDLP+T+ V++L + S+ + + MDI     P   DP+ ++L  G
Subjt:  KIAREPFIASILVV-DMSKGFKGHRLDKYDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIG

Query:  KLPEDQAAARRLRRQESPRGRLRGLLDWSRASKQNTETRVLLAYDEQRLQEV------------------------------------------------
         +P D + AR+LRRQ +       L+   +  K+     +L   D +  + V                                                
Subjt:  KLPEDQAAARRLRRQESPRGRLRGLLDWSRASKQNTETRVLLAYDEQRLQEV------------------------------------------------

Query:  ---VARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
           + R+P E LT +++PWPFAQW  DLI PLPMGKG
Subjt:  ---VARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

XP_022158520.1 uncharacterized protein LOC111024991 [Momordica charantia]5.1e-1335.29Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P
        Y+ S  PRV   +N+N DALA LAS+Y TDL +++ V++L   S++E   M+I  P++    +P+T++++ G  P+D    R+L R+ +           
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P

Query:  RGRLRGLLDWSRASK--QNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
        RG    LL      +  Q+ +  V +  + QR   ++  +P E LT ++APWPFAQW  D+I P P+GKG
Subjt:  RGRLRGLLDWSRASK--QNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

TrEMBL top hitse value%identityAlignment
A0A6J1CP53 Ribonuclease H1.6e-1234.88Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQESPRGRLRGLLDW
        Y+ S  PR   S+N+N+DALA LAS+Y TDL +++ V++L   S++E   M+ID    P   +P+ ++L  GK+P D    +++ R ++ R  LR    +
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQESPRGRLRGLLDW

Query:  SRA---------SKQN-----TETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
         R          SK++      E    +  +  R + + A+ P E L  ++APWPFAQW  +LI P P+GKG
Subjt:  SRA---------SKQN-----TETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

A0A6J1DNM4 Ribonuclease H1.2e-1232.77Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P
        Y+ S  PR   S+N+N DALA LAS+Y  DL +++ V++L   S++E   M++D P +P   DP+ E+++ G  P+D    +++ R+             
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P

Query:  RGRLRGLLDW---------SRASKQNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
        RG    LL +          R   +    + + A D  +    +  +P E LT ++APWPFAQW  D+I P P+GKG
Subjt:  RGRLRGLLDW---------SRASKQNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

A0A6J1DV78 Ribonuclease H1.6e-1530.38Show/hide
Query:  KIAREPFIASILVV-DMSKGFKGHRLDKYDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIG
        K+AR   +  +L++ D      G+R     GS+   V  S+N+N DALA LAS+Y TDLP+T+ V++L + S+ + + MDI     P   DP+ ++L  G
Subjt:  KIAREPFIASILVV-DMSKGFKGHRLDKYDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIG

Query:  KLPEDQAAARRLRRQESPRGRLRGLLDWSRASKQNTETRVLLAYDEQRLQEV------------------------------------------------
         +P D + AR+LRRQ +       L+   +  K+     +L   D +  + V                                                
Subjt:  KLPEDQAAARRLRRQESPRGRLRGLLDWSRASKQNTETRVLLAYDEQRLQEV------------------------------------------------

Query:  ---VARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
           + R+P E LT +++PWPFAQW  DLI PLPMGKG
Subjt:  ---VARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

A0A6J1DW30 Ribonuclease H2.5e-1335.29Show/hide
Query:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P
        Y+ S  PRV   +N+N DALA LAS+Y TDL +++ V++L   S++E   M+I  P++    +P+T++++ G  P+D    R+L R+ +           
Subjt:  YDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----------P

Query:  RGRLRGLLDWSRASK--QNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
        RG    LL      +  Q+ +  V +  + QR   ++  +P E LT ++APWPFAQW  D+I P P+GKG
Subjt:  RGRLRGLLDWSRASK--QNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

A0A6J1DWM2 Ribonuclease H1.6e-1232.12Show/hide
Query:  SKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----PRGRL-------------
        S+N+N D LA LAS+Y TDLP+T+ V++L + S+ + + M+I     P   DP+ ++L  G +P D + AR+LRRQ +      G+L             
Subjt:  SKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEIGKLPEDQAAARRLRRQES----PRGRL-------------

Query:  -------------RGLLDWSRASKQNTETRVLLAY----------------DEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG
                      G+      +K      V   Y                D+ +    + R+P E LT +++PWPFAQW  DLI PLPMGKG
Subjt:  -------------RGLLDWSRASKQNTETRVLLAY----------------DEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACACAGTCAACTCGCTCCGCTCGATGGGACACCTGGGCAAAAAAAAGGTGGGGCATCCCCACCGGAAAAGCTCTGGGTTCCGCAACGAAATGAGAGCGACCCATG
CCTAGATGATCGCCCAGGGATTCTCGAAGGATCGAGAGACCTTCAGTATAAGCTCACCAGAAGCCGCTCCCGACGTGGTTTAACGATCCCTCATTTGGATTCGGAGACAA
GCAATGAAACGTCAAGTAAGCCTAACGGGTTCCGAACCGAGCTCGTTCGAGAAGATCTAGATCGAGTCAAAGAAGAGATCTTCATTCAAGTGAAAAAAGAACTCGAAACT
AGGGGCGTCGGCCACACCACACAATACAAACCCTCTAAGATCGCCCGAGAACCCTTCATAGCTAGCATCTTAGTCGTAGATATGTCGAAAGGGTTCAAGGGCCACCGATT
GGACAAGTACGATGGATCGACAGACCCCAGGGTCCTATGCTCGAAGAATGCCAACACCGACGCTCTAGCTCACCTGGCATCGTCCTACGTGACCGACCTACCTCAAACGA
TCCTAGTCAAAATGCTGGGAAAGCTAAGTCTCATCGAGTCAAAGACAATGGACATCGACCAGCCAGACACCCCAGACTTGAGAGACCCAGTTACAGAATATCTGGAGATT
GGCAAGCTACCAGAAGATCAAGCAGCCGCTCGAAGGCTTCGAAGACAGGAAAGTCCACGAGGGAGACTGCGGGGACTATTGGACTGGTCAAGAGCTAGCAAACAAAATAC
TGAGACAAGGGTATTACTGGCCTACGATGAGCAAAGACTCCAGGAAGTTGTTGCACGACGACCTATCGAGCAGCTAACGAGTTTGACAGCCCCCTGGCCGTTCGCCCAGT
GGAGGACCGACTTGATTAGTCCATTGCCTATGGGAAAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACACAGTCAACTCGCTCCGCTCGATGGGACACCTGGGCAAAAAAAAGGTGGGGCATCCCCACCGGAAAAGCTCTGGGTTCCGCAACGAAATGAGAGCGACCCATG
CCTAGATGATCGCCCAGGGATTCTCGAAGGATCGAGAGACCTTCAGTATAAGCTCACCAGAAGCCGCTCCCGACGTGGTTTAACGATCCCTCATTTGGATTCGGAGACAA
GCAATGAAACGTCAAGTAAGCCTAACGGGTTCCGAACCGAGCTCGTTCGAGAAGATCTAGATCGAGTCAAAGAAGAGATCTTCATTCAAGTGAAAAAAGAACTCGAAACT
AGGGGCGTCGGCCACACCACACAATACAAACCCTCTAAGATCGCCCGAGAACCCTTCATAGCTAGCATCTTAGTCGTAGATATGTCGAAAGGGTTCAAGGGCCACCGATT
GGACAAGTACGATGGATCGACAGACCCCAGGGTCCTATGCTCGAAGAATGCCAACACCGACGCTCTAGCTCACCTGGCATCGTCCTACGTGACCGACCTACCTCAAACGA
TCCTAGTCAAAATGCTGGGAAAGCTAAGTCTCATCGAGTCAAAGACAATGGACATCGACCAGCCAGACACCCCAGACTTGAGAGACCCAGTTACAGAATATCTGGAGATT
GGCAAGCTACCAGAAGATCAAGCAGCCGCTCGAAGGCTTCGAAGACAGGAAAGTCCACGAGGGAGACTGCGGGGACTATTGGACTGGTCAAGAGCTAGCAAACAAAATAC
TGAGACAAGGGTATTACTGGCCTACGATGAGCAAAGACTCCAGGAAGTTGTTGCACGACGACCTATCGAGCAGCTAACGAGTTTGACAGCCCCCTGGCCGTTCGCCCAGT
GGAGGACCGACTTGATTAGTCCATTGCCTATGGGAAAAGGCTAG
Protein sequenceShow/hide protein sequence
MRHSQLAPLDGTPGQKKGGASPPEKLWVPQRNESDPCLDDRPGILEGSRDLQYKLTRSRSRRGLTIPHLDSETSNETSSKPNGFRTELVREDLDRVKEEIFIQVKKELET
RGVGHTTQYKPSKIAREPFIASILVVDMSKGFKGHRLDKYDGSTDPRVLCSKNANTDALAHLASSYVTDLPQTILVKMLGKLSLIESKTMDIDQPDTPDLRDPVTEYLEI
GKLPEDQAAARRLRRQESPRGRLRGLLDWSRASKQNTETRVLLAYDEQRLQEVVARRPIEQLTSLTAPWPFAQWRTDLISPLPMGKG