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Moc03g04460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:3337194..3340652
RNA-Seq ExpressionMoc03g04460
SyntenyMoc03g04460
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]2.0e-5842.66Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLR--DGTLEFEADLP---RKEFAAPTEE
        MAEFVV+D RSAYNAIFGRP+IHS RA+PSTLHQ LKYSTPNGVG VRGEQ  S ECYA+ALKG SVCALE     D +LE +ADLP   ++EF A TEE
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLR--DGTLEFEADLP---RKEFAAPTEE

Query:  LELVPLLSPEKQI---------------------------------------------------------------------------------------
        LELVPLLSPE+Q+                                                                                       
Subjt:  LELVPLLSPEKQI---------------------------------------------------------------------------------------

Query:  ----------------------------------------DLARSVPVEILDNPSILEPYLMEIGTSESSWMDPITDFIRGNSPQDPKERRKLARRAARF
                                                DLARSVPVEILDNPSILEP LME+ T   SWMD I +FI+GN PQDPKE +K+AR+ A+F
Subjt:  ----------------------------------------DLARSVPVEILDNPSILEPYLMEIGTSESSWMDPITDFIRGNSPQDPKERRKLARRAARF

Query:  VVRDGALYRRGFSLPLLRCLTPE----------EGLMARHYNACVRPRAFQVGH
        ++RDGALYR+GFSLPLL+C+TPE          EG+   H  A   P A +  H
Subjt:  VVRDGALYRRGFSLPLLRCLTPE----------EGLMARHYNACVRPRAFQVGH

XP_022152110.1 uncharacterized protein LOC111019899 [Momordica charantia]6.8e-4689.29Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETL--RDGTLEFEADLPRKEFAAPTEELEL
        MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTAS ECYA+ LKG+SVCALETL  RDGTLEFEADLP +EFAAP EELEL
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETL--RDGTLEFEADLPRKEFAAPTEELEL

Query:  VPLLSPEKQIDL
        VPLLS EKQ+ L
Subjt:  VPLLSPEKQIDL

XP_022155866.1 uncharacterized protein LOC111022880 [Momordica charantia]3.3e-4892.66Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP
        MAEFVVVDGRS YNAIFGRPIIHSFRAIPSTLHQVLKY TPNGVGTVRGEQ AS ECYAAALKG SVCALETLRDGTLEFEA+LPRKEFAAPTEELELVP
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP

Query:  LLSPEKQID
        LLSPEKQ++
Subjt:  LLSPEKQID

XP_022157676.1 uncharacterized protein LOC111024332 [Momordica charantia]5.6e-4894.39Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP
        M EFVVVDGRS YNAIFGRPIIHSFR IPSTLHQVLKYSTPNGVGTVRGEQT S ECYAAALKGSSVCALETLRDGTLE EADLPRKEFAAPTEELELVP
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP

Query:  LLSPEKQ
        LLSPEKQ
Subjt:  LLSPEKQ

XP_022158219.1 protein NYNRIN-like [Momordica charantia]5.0e-8166.54Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDG--TLEFEADLPRKEFAAPTEELEL
        MAEFVV+DGRSAYNAIFGRPIIHSFR +PSTLHQVLKYSTPNGVGTVRGEQTAS ECYA+ALKGSSVCALE    G  TLEF+ADLPR+EF+APTEELEL
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDG--TLEFEADLPRKEFAAPTEELEL

Query:  VPLLSPEKQI----------------------------------------------------------------DLARSVPVEILDNPSILEPYLMEIGT
        VPLLS EKQ+                                                                DLARSVPVEILDNPSI EP LMEIG 
Subjt:  VPLLSPEKQI----------------------------------------------------------------DLARSVPVEILDNPSILEPYLMEIGT

Query:  SESSWMDPITDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
         ESSWMDPI DFIRGNSPQDPKERRKLA R ARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  SESSWMDPITDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H9.9e-5942.66Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLR--DGTLEFEADLP---RKEFAAPTEE
        MAEFVV+D RSAYNAIFGRP+IHS RA+PSTLHQ LKYSTPNGVG VRGEQ  S ECYA+ALKG SVCALE     D +LE +ADLP   ++EF A TEE
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLR--DGTLEFEADLP---RKEFAAPTEE

Query:  LELVPLLSPEKQI---------------------------------------------------------------------------------------
        LELVPLLSPE+Q+                                                                                       
Subjt:  LELVPLLSPEKQI---------------------------------------------------------------------------------------

Query:  ----------------------------------------DLARSVPVEILDNPSILEPYLMEIGTSESSWMDPITDFIRGNSPQDPKERRKLARRAARF
                                                DLARSVPVEILDNPSILEP LME+ T   SWMD I +FI+GN PQDPKE +K+AR+ A+F
Subjt:  ----------------------------------------DLARSVPVEILDNPSILEPYLMEIGTSESSWMDPITDFIRGNSPQDPKERRKLARRAARF

Query:  VVRDGALYRRGFSLPLLRCLTPE----------EGLMARHYNACVRPRAFQVGH
        ++RDGALYR+GFSLPLL+C+TPE          EG+   H  A   P A +  H
Subjt:  VVRDGALYRRGFSLPLLRCLTPE----------EGLMARHYNACVRPRAFQVGH

A0A6J1DD03 uncharacterized protein LOC1110198993.3e-4689.29Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETL--RDGTLEFEADLPRKEFAAPTEELEL
        MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTAS ECYA+ LKG+SVCALETL  RDGTLEFEADLP +EFAAP EELEL
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETL--RDGTLEFEADLPRKEFAAPTEELEL

Query:  VPLLSPEKQIDL
        VPLLS EKQ+ L
Subjt:  VPLLSPEKQIDL

A0A6J1DT04 uncharacterized protein LOC1110228801.6e-4892.66Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP
        MAEFVVVDGRS YNAIFGRPIIHSFRAIPSTLHQVLKY TPNGVGTVRGEQ AS ECYAAALKG SVCALETLRDGTLEFEA+LPRKEFAAPTEELELVP
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP

Query:  LLSPEKQID
        LLSPEKQ++
Subjt:  LLSPEKQID

A0A6J1DYS0 Ribonuclease H2.4e-8166.54Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDG--TLEFEADLPRKEFAAPTEELEL
        MAEFVV+DGRSAYNAIFGRPIIHSFR +PSTLHQVLKYSTPNGVGTVRGEQTAS ECYA+ALKGSSVCALE    G  TLEF+ADLPR+EF+APTEELEL
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDG--TLEFEADLPRKEFAAPTEELEL

Query:  VPLLSPEKQI----------------------------------------------------------------DLARSVPVEILDNPSILEPYLMEIGT
        VPLLS EKQ+                                                                DLARSVPVEILDNPSI EP LMEIG 
Subjt:  VPLLSPEKQI----------------------------------------------------------------DLARSVPVEILDNPSILEPYLMEIGT

Query:  SESSWMDPITDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL
         ESSWMDPI DFIRGNSPQDPKERRKLA R ARFVVRDGALYRRGFSLPLLRCLTPEEGL
Subjt:  SESSWMDPITDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGL

A0A6J1DYW5 uncharacterized protein LOC1110243322.7e-4894.39Show/hide
Query:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP
        M EFVVVDGRS YNAIFGRPIIHSFR IPSTLHQVLKYSTPNGVGTVRGEQT S ECYAAALKGSSVCALETLRDGTLE EADLPRKEFAAPTEELELVP
Subjt:  MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVP

Query:  LLSPEKQ
        LLSPEKQ
Subjt:  LLSPEKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGTTCGTGGTAGTTGACGGTAGATCGGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTCGGGCCATTCCCTCAACACTACATCAAGTTTTGAA
GTATTCCACCCCCAATGGCGTGGGTACGGTCCGAGGAGAACAGACCGCTTCGAGCGAGTGTTATGCCGCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAGACTCTCA
GGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAGATCGACCTC
GCCAGGTCGGTCCCCGTCGAGATCCTAGATAATCCCTCGATCTTAGAGCCATATCTGATGGAGATCGGCACTTCAGAATCCTCATGGATGGACCCGATCACGGACTTCAT
TAGGGGTAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGCTCGGTTCGTGGTTCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTC
TATTGAGATGCCTAACCCCTGAAGAGGGCCTAATGGCCAGACATTACAATGCCTGCGTCCGACCTCGGGCCTTTCAGGTCGGACATTTGGTCTTAAGGAGGGTCCAAACG
CATGTGGGTGCCCTTGACCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCAACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCC
GTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGTTCGTGGTAGTTGACGGTAGATCGGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTCGGGCCATTCCCTCAACACTACATCAAGTTTTGAA
GTATTCCACCCCCAATGGCGTGGGTACGGTCCGAGGAGAACAGACCGCTTCGAGCGAGTGTTATGCCGCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAGACTCTCA
GGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAGATCGACCTC
GCCAGGTCGGTCCCCGTCGAGATCCTAGATAATCCCTCGATCTTAGAGCCATATCTGATGGAGATCGGCACTTCAGAATCCTCATGGATGGACCCGATCACGGACTTCAT
TAGGGGTAACTCACCACAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGGGCAGCTCGGTTCGTGGTTCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTC
TATTGAGATGCCTAACCCCTGAAGAGGGCCTAATGGCCAGACATTACAATGCCTGCGTCCGACCTCGGGCCTTTCAGGTCGGACATTTGGTCTTAAGGAGGGTCCAAACG
CATGTGGGTGCCCTTGACCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATAGTCCAACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCC
GTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MAEFVVVDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTPNGVGTVRGEQTASSECYAAALKGSSVCALETLRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQIDL
ARSVPVEILDNPSILEPYLMEIGTSESSWMDPITDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGLMARHYNACVRPRAFQVGHLVLRRVQT
HVGALDPAWEGPFEIKGIVQPGTYILADLKGDVLAHPWNAEHLKRYYP