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Moc03g04570 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g04570
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:3425419..3425916
RNA-Seq ExpressionMoc03g04570
SyntenyMoc03g04570
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]1.0e-3763.8Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y    N   S NE EYEALLAGLKV +YVGVRNILILSDSQLIV Q                              IRQIPRAQNVN DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
          YET LGRTV +EIL  PSIEAQEAMDID+QGQ EENW S LIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

XP_022155342.1 uncharacterized protein LOC111022476 [Momordica charantia]2.0e-2261.34Show/hide
Query:  SINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIRQIPRAQNVNFDALARLAAAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLI
        S NE EYEALLAGLKV +  G R +                           ARLAAAYET L RTV +EILPEPSIEA EAMDIDEQGQ E+NW S LI
Subjt:  SINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIRQIPRAQNVNFDALARLAAAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLI

Query:  KYLRDEILPTEKIEAQQLQ
        KYLRD ILPTEKIEAQQLQ
Subjt:  KYLRDEILPTEKIEAQQLQ

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.5e-3863.19Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIR------------------------------QIPRAQNVNFDALARLA
        KE   Y    N   S N+ EYEALLAGLKV +YVGVRNILILSDSQLIV Q++                              QIPRAQNV+ DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIR------------------------------QIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
        A YET LGRTV +EILPEPSIEAQEAMDID QGQ EEN  SPLIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]4.1e-3964.42Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y  + N   S NEVEYEALLA LKV +YVGVRNILILSDSQLIV Q                              IRQIP AQNVN D LARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
         AYET LGRTV +EILP PSIEAQEAMDID QGQ EENW SPLIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]1.3e-3258.28Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y    N   S N+ EYEALLA LKV +Y+GV+NILILSDSQLIV Q                              IRQIP  QNVN DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
        AAY T LGRT+S+EIL EPSI+AQE MDIDEQ Q EENW S LIKYL+D ILP E IE QQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H4.9e-3863.8Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y    N   S NE EYEALLAGLKV +YVGVRNILILSDSQLIV Q                              IRQIPRAQNVN DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
          YET LGRTV +EIL  PSIEAQEAMDID+QGQ EENW S LIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

A0A6J1DP30 uncharacterized protein LOC1110224769.8e-2361.34Show/hide
Query:  SINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIRQIPRAQNVNFDALARLAAAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLI
        S NE EYEALLAGLKV +  G R +                           ARLAAAYET L RTV +EILPEPSIEA EAMDIDEQGQ E+NW S LI
Subjt:  SINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIRQIPRAQNVNFDALARLAAAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLI

Query:  KYLRDEILPTEKIEAQQLQ
        KYLRD ILPTEKIEAQQLQ
Subjt:  KYLRDEILPTEKIEAQQLQ

A0A6J1DVC6 Ribonuclease H1.7e-3863.19Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIR------------------------------QIPRAQNVNFDALARLA
        KE   Y    N   S N+ EYEALLAGLKV +YVGVRNILILSDSQLIV Q++                              QIPRAQNV+ DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIR------------------------------QIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
        A YET LGRTV +EILPEPSIEAQEAMDID QGQ EEN  SPLIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

A0A6J1DZU0 Ribonuclease H2.0e-3964.42Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y  + N   S NEVEYEALLA LKV +YVGVRNILILSDSQLIV Q                              IRQIP AQNVN D LARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
         AYET LGRTV +EILP PSIEAQEAMDID QGQ EENW SPLIKYL+D ILPTEKIEAQQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

A0A6J1E1Q5 uncharacterized protein LOC1110256236.1e-3358.28Show/hide
Query:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA
        KE   Y    N   S N+ EYEALLA LKV +Y+GV+NILILSDSQLIV Q                              IRQIP  QNVN DALARLA
Subjt:  KELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQ------------------------------IRQIPRAQNVNFDALARLA

Query:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ
        AAY T LGRT+S+EIL EPSI+AQE MDIDEQ Q EENW S LIKYL+D ILP E IE QQLQ
Subjt:  AAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEENWDSPLIKYLRDEILPTEKIEAQQLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAGAGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGTCGAATATGAAGCTCTACTAGCAGGACTAAAAGTGGTCAAGTACGTTGG
GGTCAGGAACATACTGATACTAAGTGATTCACAGCTGATTGTAGATCAGATTCGACAAATTCCACGTGCTCAAAACGTCAACTTCGATGCGTTAGCTCGACTAGCTGCAG
CTTATGAAACCGGCCTAGGCAGAACTGTATCGCTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGCAATGGATATTGACGAGCAAGGGCAACTAGAAGAAAAC
TGGGATAGCCCTTTGATCAAATATTTGAGAGACGAGATCCTGCCTACTGAAAAGATAGAGGCCCAGCAGCTACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAGAGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGTCGAATATGAAGCTCTACTAGCAGGACTAAAAGTGGTCAAGTACGTTGG
GGTCAGGAACATACTGATACTAAGTGATTCACAGCTGATTGTAGATCAGATTCGACAAATTCCACGTGCTCAAAACGTCAACTTCGATGCGTTAGCTCGACTAGCTGCAG
CTTATGAAACCGGCCTAGGCAGAACTGTATCGCTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGCAATGGATATTGACGAGCAAGGGCAACTAGAAGAAAAC
TGGGATAGCCCTTTGATCAAATATTTGAGAGACGAGATCCTGCCTACTGAAAAGATAGAGGCCCAGCAGCTACAATGA
Protein sequenceShow/hide protein sequence
MAKELETYENESNKVNSINEVEYEALLAGLKVVKYVGVRNILILSDSQLIVDQIRQIPRAQNVNFDALARLAAAYETGLGRTVSLEILPEPSIEAQEAMDIDEQGQLEEN
WDSPLIKYLRDEILPTEKIEAQQLQ