; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g05340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g05340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr3:3955336..3957352
RNA-Seq ExpressionMoc03g05340
SyntenyMoc03g05340
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]7.3e-3772.64Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M+TSI+ LLA+++LNG+NY  WKSNLNTIL++DDLRFVL E+CPQAPA NA   VR AYDRW+KANDKA+VYILAS++DVLAKKH+   TAK IMDSL+ 
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.1e-4893.58Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLAAQRLNGENYK+WKSNLNTIL+IDDL+FVLQEDCPQA APNATV VR AYDRWIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPSSQA
Subjt:  MFGQPSSQA
XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]2.5e-4588.07Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL AQ+LN ENYK+WKSN+NTILMIDDLRFVLQEDCPQAPAPNATV VRN YDRWIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPSSQA
Subjt:  MFGQPSSQA
XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]6.0e-4789.91Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAAQ+LNGENY++WKSNLNTIL+IDDLRFVLQEDCPQAP  NATV VRNAYDRWIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPS QA
Subjt:  MFGQPSSQA
XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]1.2e-3672.9Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS I LLA+ +LNG+NY  WKSNLNTIL+IDDLRFVL E+CP APAPNA   VR+AYDRW+KAN+KA+VYILASIS+VL+KKHE   T +EIMDSLQ+
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSS
        +FGQPS+
Subjt:  MFGQPSS
TrEMBL top hitse value%identityAlignment
A0A6J1DFZ2 uncharacterized protein LOC1110200955.3e-4993.58Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLAAQRLNGENYK+WKSNLNTIL+IDDL+FVLQEDCPQA APNATV VR AYDRWIKANDKAKVYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPSSQA
Subjt:  MFGQPSSQA
A0A6J1DW68 uncharacterized protein LOC1110246371.2e-4588.07Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL AQ+LN ENYK+WKSN+NTILMIDDLRFVLQEDCPQAPAPNATV VRN YDRWIKANDKAKV ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPSSQA
Subjt:  MFGQPSSQA
A0A6J1DWG6 uncharacterized protein LOC1110250216.0e-3772.9Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTS I LLA+ +LNG+NY  WKSNLNTIL+IDDLRFVL E+CP APAPNA   VR+AYDRW+KAN+KA+VYILASIS+VL+KKHE   T +EIMDSLQ+
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSS
        +FGQPS+
Subjt:  MFGQPSS
A0A6J1DWL0 uncharacterized protein LOC1110247342.9e-4789.91Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAAQ+LNGENY++WKSNLNTIL+IDDLRFVLQEDCPQAP  NATV VRNAYDRWIK+NDKAKVYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSSQA
        MFGQPS QA
Subjt:  MFGQPSSQA
E2GK51 Gag/pol protein (Fragment)3.5e-3772.64Show/hide
Query:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M+TSI+ LLA+++LNG+NY  WKSNLNTIL++DDLRFVL E+CPQAPA NA   VR AYDRW+KANDKA+VYILAS++DVLAKKH+   TAK IMDSL+ 
Subjt:  MSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTATTCCGAGGCTCTGGTTCCCGGGTGTTTTTCGACGCGATTCCGAGGCTCTGGTTCGCGGATTATTGGGGTGGACCTCTGAAATCCGAAAATGTTGGGTCACA
CTTACGAGGAGTTGTTAACATGTCTACTTCTATTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAAGAATGGAAGTCAAACCTAAATACTATTCTCA
TGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCAACTGTAGATGTGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGAC
AAGGCCAAGGTCTACATCCTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACA
ACCGTCCTCACAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGCTATTCCGAGGCTCTGGTTCCCGGGTGTTTTTCGACGCGATTCCGAGGCTCTGGTTCGCGGATTATTGGGGTGGACCTCTGAAATCCGAAAATGTTGGGTCACA
CTTACGAGGAGTTGTTAACATGTCTACTTCTATTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAAGAATGGAAGTCAAACCTAAATACTATTCTCA
TGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCTCCTGCGCCTAACGCAACTGTAGATGTGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGAC
AAGGCCAAGGTCTACATCCTGGCGAGCATATCTGATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACA
ACCGTCCTCACAGGCTTGA
Protein sequenceShow/hide protein sequence
MTLFRGSGSRVFFDAIPRLWFADYWGGPLKSENVGSHLRGVVNMSTSIIALLAAQRLNGENYKEWKSNLNTILMIDDLRFVLQEDCPQAPAPNATVDVRNAYDRWIKAND
KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQA