CuGenDBv2

Gene ID	Moc03g05370
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr3:3973893..3979352
RNA-Seq Expression	Moc03g05370
Synteny	Moc03g05370
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-62

62.17

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSW+QL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L+  K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-62

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-62

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-62

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-62

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

9.5e-63

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

A0A5A7TU93 Gag/pol protein

7.3e-63

62.17

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSW+QL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L+  K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

A0A5A7TWB9 Gag/pol protein

9.5e-63

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

A0A5A7TZD7 Gag/pol protein

9.5e-63

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

A0A5A7V4M1 Gag/pol protein

9.5e-63

62.61

Show/hide

Query:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK
        MVHFNVAE NGAVIDE S                                    QT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +K
Subjt:  MVHFNVAESNGAVIDEQS------------------------------------QTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTFK

Query:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL
        KKK  G+G K + AAA T KK K   A KG CFHCN +G+WKRNCPKYL EKKKA +GKYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQGISSWRQL
Subjt:  KKKAPGKGYKPDSAAA-TAKKGKAKVAEKGKCFHCNMDGYWKRNCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQL

Query:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN
        + GEMT++VGTG VVS +AVG L+L   K+
Subjt:  DAGEMTLKVGTGEVVSTVAVGELKLFTNKN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATAGACGAGCAGAGTCAGACCTACCAGTCTCTTATGAAAAGTAAGGGACAAGAAGGGGAGGCAAAT
GTTGCCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAGGCTCCTGGTAAG
GGGTATAAACCTGACTCCGCTGCTGCCACTGCCAAGAAAGGCAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGGGTATTGGAAGCGC
AACTGCCCAAAGTACTTAGTCGAAAAGAAGAAAGCCAATGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATA
TTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAAGTCGGAACAGGAGAG
GTCGTCTCAACTGTGGCGGTGGGGGAGCTCAAGTTGTTTACAAACAAGAATATGGGCCCGGTGTTTTGGGCATATTGTTTCTGTATTGAGTCTGTAAGTCCGGGT
CGCTCAAAAGTTGTTCGTGGCGTCGGATTTAGGGAAAAATTGCAGAAAACAGCGAAGAAGATGAAGCATACTGCGCAAACAGTGCCGTGGCGCTGCAGCGACAGG
ACACAGCGCCATGGCACCATGTCTGGGCGCCGCGGCGCTGCCCTTAGGCGCCAAGGCGCTGTTCCGAGTGTTTTTCGGCGCGTTTCCGTGGTTCCAGTTCGCGGT
TCGAGGGCGGCAGTCGTTTTCTCTTTTTTGTTTATTTTGCTTTCTTAG

mRNA sequence

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Protein sequence

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MVHFNVAESNGAVIDEQSQTYQSLMKSKGQEGEANVATSKRFNRGSSSGTKSAPSSSGSKTFKKKKAPGKGYKPDSAAATAKKGKAKVAEKGKCFHCNMDGYWKR
NCPKYLVEKKKANEGKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGISSWRQLDAGEMTLKVGTGEVVSTVAVGELKLFTNKNMGPVFWAYCFCIESVSPG
RSKVVRGVGFREKLQKTAKKMKHTAQTVPWRCSDRTQRHGTMSGRRGAALRRQGAVPSVFRRVSVVPVRGSRAAVVFSFLFILLS

Moc03g05370 (gene) of Bitter gourd (OHB3-1) v2 genome