; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g05890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g05890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:4327318..4327833
RNA-Seq ExpressionMoc03g05890
SyntenyMoc03g05890
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135947.1 uncharacterized protein LOC111007781 [Momordica charantia]3.6e-2552.21Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GA HI+V++DSQL+VNQI+EEYQ +D RME+YL                          DALAKLA AY+TDL+RSVLVEILD   +  P++ME+D 
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL
         +PSWIDPI E++ GN+PQD KE KK+ RK+A  IL
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL

XP_022143565.1 uncharacterized protein LOC111013434 [Momordica charantia]1.1e-2651.45Show/hide
Query:  MDKRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEV
        M KR GA+H+ +++DSQLIVNQIKE+YQT+D RME+YL                          DALAKLA AY+TDL+RSV VEILD   +  P++ME+
Subjt:  MDKRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEV

Query:  DSHTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL
        DSH PSW++PIK++L G VP DP+E KK+ RK+A  +L
Subjt:  DSHTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL

XP_022149417.1 protein NYNRIN-like [Momordica charantia]2.3e-2763.21Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYLDALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDSHTPSWIDPIKEYLMGNVPQDPKEAKK
        KR GA+H++V++DSQLIVNQIKEEYQT D RME+Y   L KLA AY+TDL+RSV VEILD   +  P++MEVD+ +PSW+DPI E++ GN PQDPKE KK
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYLDALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDSHTPSWIDPIKEYLMGNVPQDPKEAKK

Query:  VVRKSA
        + R++A
Subjt:  VVRKSA

XP_022152157.1 uncharacterized protein LOC111019946 [Momordica charantia]7.2e-2653.03Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GA+HI+V++DSQLIVNQIKEEYQ +D RME+YL                          DALAKLA AY+TDL+RSVLVEILD   +  P++MEV++
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSA
         +P+W+DPI E++ GN PQDPKE KK+VR++A
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSA

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]6.1e-2552.67Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GASHI+V++DSQLIVNQIKEEYQT+D RME+YL                          DALAKLA AY+ DL+RSV VEILD   +  P++MEVD+
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKS
         +P+W+DPI E++ GN PQDPKE KK+ R++
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKS

TrEMBL top hitse value%identityAlignment
A0A6J1C472 uncharacterized protein LOC1110077811.7e-2552.21Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GA HI+V++DSQL+VNQI+EEYQ +D RME+YL                          DALAKLA AY+TDL+RSVLVEILD   +  P++ME+D 
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL
         +PSWIDPI E++ GN+PQD KE KK+ RK+A  IL
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL

A0A6J1CP53 Ribonuclease H5.4e-2751.45Show/hide
Query:  MDKRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEV
        M KR GA+H+ +++DSQLIVNQIKE+YQT+D RME+YL                          DALAKLA AY+TDL+RSV VEILD   +  P++ME+
Subjt:  MDKRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEV

Query:  DSHTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL
        DSH PSW++PIK++L G VP DP+E KK+ RK+A  +L
Subjt:  DSHTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSAWNIL

A0A6J1D7W6 Ribonuclease H1.1e-2763.21Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYLDALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDSHTPSWIDPIKEYLMGNVPQDPKEAKK
        KR GA+H++V++DSQLIVNQIKEEYQT D RME+Y   L KLA AY+TDL+RSV VEILD   +  P++MEVD+ +PSW+DPI E++ GN PQDPKE KK
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYLDALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDSHTPSWIDPIKEYLMGNVPQDPKEAKK

Query:  VVRKSA
        + R++A
Subjt:  VVRKSA

A0A6J1DFF1 uncharacterized protein LOC1110199463.5e-2653.03Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GA+HI+V++DSQLIVNQIKEEYQ +D RME+YL                          DALAKLA AY+TDL+RSVLVEILD   +  P++MEV++
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSA
         +P+W+DPI E++ GN PQDPKE KK+VR++A
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKSA

A0A6J1DNM4 Ribonuclease H3.0e-2552.67Show/hide
Query:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS
        K  GASHI+V++DSQLIVNQIKEEYQT+D RME+YL                          DALAKLA AY+ DL+RSV VEILD   +  P++MEVD+
Subjt:  KRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYL--------------------------DALAKLAFAYKTDLSRSVLVEILD--PLQFPNIMEVDS

Query:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKS
         +P+W+DPI E++ GN PQDPKE KK+ R++
Subjt:  HTPSWIDPIKEYLMGNVPQDPKEAKKVVRKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAACGGTTTGGAGCTAGCCACATCCGAGTGTACAACGATTCTCAACTAATCGTGAACCAAATTAAAGAAGAGTACCAGACGAGAGACTATCGAATGGAG
CAATACTTGGATGCCTTAGCTAAATTGGCATTTGCATACAAGACCGATCTCTCTAGATCGGTTCTTGTGGAAATACTTGACCCCCTTCAATTCCCGAATATAATG
GAAGTCGACTCCCATACTCCATCATGGATTGACCCGATTAAGGAGTACCTTATGGGCAATGTTCCACAAGACCCAAAAGAGGCAAAAAAGGTGGTGCGAAAGTCA
GCTTGGAACATACTCCTTATCACTGCTCAAATGTCTCACAGTCGAAGATGGAAACTATGTCCTAAGGGAAGTACGGGGTTTGTGGCAACCACTCGGGGGCCAGTA
TGTTATCAGCCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAACGGTTTGGAGCTAGCCACATCCGAGTGTACAACGATTCTCAACTAATCGTGAACCAAATTAAAGAAGAGTACCAGACGAGAGACTATCGAATGGAG
CAATACTTGGATGCCTTAGCTAAATTGGCATTTGCATACAAGACCGATCTCTCTAGATCGGTTCTTGTGGAAATACTTGACCCCCTTCAATTCCCGAATATAATG
GAAGTCGACTCCCATACTCCATCATGGATTGACCCGATTAAGGAGTACCTTATGGGCAATGTTCCACAAGACCCAAAAGAGGCAAAAAAGGTGGTGCGAAAGTCA
GCTTGGAACATACTCCTTATCACTGCTCAAATGTCTCACAGTCGAAGATGGAAACTATGTCCTAAGGGAAGTACGGGGTTTGTGGCAACCACTCGGGGGCCAGTA
TGTTATCAGCCAAAGTGA
Protein sequenceShow/hide protein sequence
MDKRFGASHIRVYNDSQLIVNQIKEEYQTRDYRMEQYLDALAKLAFAYKTDLSRSVLVEILDPLQFPNIMEVDSHTPSWIDPIKEYLMGNVPQDPKEAKKVVRKS
AWNILLITAQMSHSRRWKLCPKGSTGFVATTRGPVCYQPK