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Moc03g06100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g06100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr3:4452638..4461483
RNA-Seq ExpressionMoc03g06100
SyntenyMoc03g06100
Gene Ontology termsGO:0016829 - lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]1.1e-2166.99Show/hide
Query:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLA-----------GRTTLDKVAA--MVLQELVGLSWKAELHVMNYARGSSLLTDK
        +AS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLH NHS  A             ++L  V +     QELVGLSWKAEL VMNYA GS LLTDK
Subjt:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLA-----------GRTTLDKVAA--MVLQELVGLSWKAELHVMNYARGSSLLTDK

Query:  EYG
        E G
Subjt:  EYG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]2.1e-1765Show/hide
Query:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLAGRTTLDKVAAMVLQ--------ELVGLSWKAEL
        +ASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL  NHSGLAGRTT DKV A+ L+        E++G++ +  +
Subjt:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLAGRTTLDKVAAMVLQ--------ELVGLSWKAEL
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like5.2e-2266.99Show/hide
Query:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLA-----------GRTTLDKVAA--MVLQELVGLSWKAELHVMNYARGSSLLTDK
        +AS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLH NHS  A             ++L  V +     QELVGLSWKAEL VMNYA GS LLTDK
Subjt:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLA-----------GRTTLDKVAA--MVLQELVGLSWKAELHVMNYARGSSLLTDK

Query:  EYG
        E G
Subjt:  EYG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.0e-1765Show/hide
Query:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLAGRTTLDKVAAMVLQ--------ELVGLSWKAEL
        +ASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL  NHSGLAGRTT DKV A+ L+        E++G++ +  +
Subjt:  NASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLAGRTTLDKVAAMVLQ--------ELVGLSWKAEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGACCTTTAGGATGAGCTGGATTTTGCTGAGCAGGAGACTTGCAAGAGAAAACACTTCAAAGCCCAAGCACCCGACCAAGCCTCAACGGCTCTTTAAGGTAAGTAT
GAATTACGACGTGCTGTCGTGGAGTTTGTTGAAATATGTGGCTAAGCAAGACACTACTAGGTCGGTTCAAACAAAGAATGGGAACGAGACCAAAGGAGATCATGGTTGGC
TCGGCCATAACGGGCGTTGGCTCGGTAGACAGTGGAAGTACCGAGGTGAGGCACTGGTCGGTCCTAGAAACACCCGTAGCAACGTGAGGAGTCAACGACTGGAATGCCCA
AAGATCATAAATGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAA
TGACCTACAGCTCCTGCATGATAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGAGCTTGTTGGCCTTTCTTGGAAAGCTG
AGCTTCATGTGATGAATTATGCTAGGGGAAGCTCTTTATTGACTGACAAGGAGTATGGTCGACTTGAATGGAGAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGA
AGGTCACACTACTCAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGTGGAGTCGCCAAGCTGTCGCAACGTCATCGCGACGCGAAGCGGCAGACGTCATCCCCTGACGG
GTCTCTTTCGAGATTAGGGTGTGCCCACGAGTCTGAAAACTGTGAAAGAGCACTCAAGGTCGAAGTCAGGTGGTCAGTGATCCGTGCATCGGTTGTAGAAGTTTTGCGCC
GGAGGTGCAGGTTGTCTGAACTTGTGATCACCGGGGGACGTGTGCAGTCTGTGTATCGTCGGGGTCGCCGGCCTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGACCTTTAGGATGAGCTGGATTTTGCTGAGCAGGAGACTTGCAAGAGAAAACACTTCAAAGCCCAAGCACCCGACCAAGCCTCAACGGCTCTTTAAGGTAAGTAT
GAATTACGACGTGCTGTCGTGGAGTTTGTTGAAATATGTGGCTAAGCAAGACACTACTAGGTCGGTTCAAACAAAGAATGGGAACGAGACCAAAGGAGATCATGGTTGGC
TCGGCCATAACGGGCGTTGGCTCGGTAGACAGTGGAAGTACCGAGGTGAGGCACTGGTCGGTCCTAGAAACACCCGTAGCAACGTGAGGAGTCAACGACTGGAATGCCCA
AAGATCATAAATGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAA
TGACCTACAGCTCCTGCATGATAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGAGCTTGTTGGCCTTTCTTGGAAAGCTG
AGCTTCATGTGATGAATTATGCTAGGGGAAGCTCTTTATTGACTGACAAGGAGTATGGTCGACTTGAATGGAGAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGA
AGGTCACACTACTCAGTCTCCGATCTAATCTTAAGGGTAAAGCCTGGTGGAGTCGCCAAGCTGTCGCAACGTCATCGCGACGCGAAGCGGCAGACGTCATCCCCTGACGG
GTCTCTTTCGAGATTAGGGTGTGCCCACGAGTCTGAAAACTGTGAAAGAGCACTCAAGGTCGAAGTCAGGTGGTCAGTGATCCGTGCATCGGTTGTAGAAGTTTTGCGCC
GGAGGTGCAGGTTGTCTGAACTTGTGATCACCGGGGGACGTGTGCAGTCTGTGTATCGTCGGGGTCGCCGGCCTGGGTGA
Protein sequenceShow/hide protein sequence
MMTFRMSWILLSRRLARENTSKPKHPTKPQRLFKVSMNYDVLSWSLLKYVAKQDTTRSVQTKNGNETKGDHGWLGHNGRWLGRQWKYRGEALVGPRNTRSNVRSQRLECP
KIINASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHDNHSGLAGRTTLDKVAAMVLQELVGLSWKAELHVMNYARGSSLLTDKEYGRLEWRISCACTGTEIPR
RSHYSVSDLILRVKPGGVAKLSQRHRDAKRQTSSPDGSLSRLGCAHESENCERALKVEVRWSVIRASVVEVLRRRCRLSELVITGGRVQSVYRRGRRPG