; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g06560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g06560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:4713749..4714757
RNA-Seq ExpressionMoc03g06560
SyntenyMoc03g06560
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.0e-14087.24Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK----K
        MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK    +
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK----K

Query:  IGANDGFTLDYRR----------------------DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS
             G    Y+R                      DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS
Subjt:  IGANDGFTLDYRR----------------------DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS

Query:  WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG
        WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG
Subjt:  WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG

XP_028075737.1 uncharacterized protein LOC114277953 [Camellia sinensis]5.5e-3035.57Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN
        MK LCWN  GLGNP T R L+ L+++  P +VFL ETK +     R + +L    C +V   G SGGL LLW  +  ++I+S S GH+DSII  +   A+
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN

Query:  DGFTLDY---------------RR-------------DFNEIVSMTEKMGGVCRNESQMRG-------CPI-----------W-----------ERLDRF
          FT  Y               RR             DFNEI+   EK G   R++ QM G       C +           W           ERLDR 
Subjt:  DGFTLDY---------------RR-------------DFNEIVSMTEKMGGVCRNESQMRG-------CPI-----------W-----------ERLDRF

Query:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCH--KQRKI-RFEESWLQIDGCRDIITGTWGSLPGI-GIEAFQAKICSCLSRLNEWN
        ++NE  LN     +V HL   SSDH PIL   D E  +A   H  K RK+ RFE  WL+ + C  IIT  W     + G+E    K+ +  S+L  WN
Subjt:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCH--KQRKI-RFEESWLQIDGCRDIITGTWGSLPGI-GIEAFQAKICSCLSRLNEWN

XP_030922943.1 uncharacterized protein LOC115949807 [Quercus lobata]5.5e-3033.85Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN
        M SLCWN  G+GNP T   LR+ +RR  P++VFLSETK       + K  L F   + V S G+SGGL LLW+SD+N+ I+S S  HID+IIT+   G +
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN

Query:  DGFTLDYR----------------------------RDFNEIVSMTEKMGGVCRNESQMRG----------------------CPIWE-------RLDRF
          FT  Y                              DFNEI+SMTEK GG  R++SQM G                      C + E       RLDR 
Subjt:  DGFTLDYR----------------------------RDFNEIVSMTEKMGGVCRNESQMRG----------------------CPIWE-------RLDRF

Query:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTW--GSLPGIGIEAFQAKICSCLSRLNEWNKIRL
          N   L       V HL+  +SDH  +LA  D   P   T    R+  F+  W++ + C ++I   W  GSL     E   + +  C S L  WN+  +
Subjt:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTW--GSLPGIGIEAFQAKICSCLSRLNEWNKIRL

Query:  NRSLKGAIAYKEKELERLRQLD
          S+   IA K + L  +   D
Subjt:  NRSLKGAIAYKEKELERLRQLD

XP_042962672.1 uncharacterized protein LOC122296942 [Carya illinoinensis]8.5e-3132.32Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITD------
        MK L WN+ GLGNP + R+LR+L+    P+++FL ETK +       K  L F CC  V S G+SGGL LLW  D N+RI + S  HI + IT+      
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITD------

Query:  ---------------------KKIGANDGFTLDYRRDFNEIVSMTEKMGGVCRNESQMR-------GCPI-----------W-----------ERLDRFL
                             K +G           DFNEI+  +EK+GG  R++ QMR        C +           W           ERLDRFL
Subjt:  ---------------------KKIGANDGFTLDYRRDFNEIVSMTEKMGGVCRNESQMR-------GCPI-----------W-----------ERLDRFL

Query:  INESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPG-IGIEAFQAKICSCLSRLNEWNKIRLNR
         N    +   NL+VTH     SDH P+    +  L R      +R  RFE  W+    C  II   WG   G I ++    +I SC + L  WNK     
Subjt:  INESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPG-IGIEAFQAKICSCLSRLNEWNKIRLNR

Query:  SLKGAIAYKEKELERLRQLDGLDGERRC
          K     K     RL+ L+  D  + C
Subjt:  SLKGAIAYKEKELERLRQLDGLDGERRC

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]2.1e-2931.21Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN
        M  + WN  GLGNP   R LR+LVR+  P ++FL ETK + T     KR L ++CC +V+S G+SGGL L+W  ++N+ +QS S  HID++I + +    
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN

Query:  DGFTLDYRR----------------------------DFNEIVSMTEKMGGVCRNESQMR-----------------GCP------------IWERLDRF
          FT  Y                              DFNE++   EK GG  R E QMR                 G P            + ERLDR+
Subjt:  DGFTLDYRR----------------------------DFNEIVSMTEKMGGVCRNESQMR-----------------GCP------------IWERLDRF

Query:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTW-GSLPGIGIEAFQAKICSCLSRLNEWNKIR
        L N+  ++     +V H    SSDH PIL        R  +  + +  RFE  W +     +I+  +W G   G  +   + +I +C  RL +WNK +
Subjt:  LINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTW-GSLPGIGIEAFQAKICSCLSRLNEWNKIR

TrEMBL top hitse value%identityAlignment
A0A2N9EVR9 F-box domain-containing protein1.6e-2729.63Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGA-
        M  L WN  GLGNP T + L  LV    P +VFL ET  +     R + +L F+      S  K GGL LLW    N+R+ S SP HID+++ +    A 
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGA-

Query:  --------------NDGFTLDYR------------RDFNEIVSMTEKMGGVCRNESQMR----------------------------GCPIWERLDRFLI
                       + +TL  R             DFNE+V + EK G   R+E QM+                            G   WERLDR + 
Subjt:  --------------NDGFTLDYR------------RDFNEIVSMTEKMGGVCRNESQMR----------------------------GCPIWERLDRFLI

Query:  NESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGS-LPGIGIEAFQAKICSCLSRLNEWNKIRLNRS
            L +  + +V HL++  SDH+P+  S D  +  +     ++  RFEE W    GC ++IT  W   +PG+ + +   KI +C   L  W+K     +
Subjt:  NESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGS-LPGIGIEAFQAKICSCLSRLNEWNKIRLNRS

Query:  LKGAIAYKEKELERLRQLDGLDGE
        +K  I   EK L +   +    GE
Subjt:  LKGAIAYKEKELERLRQLDGLDGE

A0A6J1DUG8 uncharacterized protein LOC1110241354.9e-14187.24Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK----K
        MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK    +
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK----K

Query:  IGANDGFTLDYRR----------------------DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS
             G    Y+R                      DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS
Subjt:  IGANDGFTLDYRR----------------------DFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILAS

Query:  WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG
        WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG
Subjt:  WDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDG

A0A6J5XHS7 Uncharacterized protein1.5e-2831.9Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSII--TDKKIG
        M  LCWNV GLGNP TFR LR L+R  +P+++FLS+TK         +R+L    C SV   G++GGL  LW     V I S SPGHID+I+   D +  
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSII--TDKKIG

Query:  ANDGF----TLDYRR---------------------DFNEIVSMTEKMGGVCRNESQMRG----------------------CPIWE-------RLDRFL
           GF     +  RR                     DFNEI+   E  G   R  SQMR                         +W+       RLDR +
Subjt:  ANDGF----TLDYRR---------------------DFNEIVSMTEKMGGVCRNESQMRG----------------------CPIWE-------RLDRFL

Query:  INESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRS
         N   +     +   HL  + SDH P+L+   +  P  W   K ++  F+E W  ++GC+D+IT  W    G  +E    K+ +C   L  WN   +   
Subjt:  INESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRS

Query:  LKGAIAYKEKELERLRQLDGLDGERR
          G I  K + L+  R+LD  D +RR
Subjt:  LKGAIAYKEKELERLRQLDGLDGERR

A0A7J6DZ24 CCHC-type domain-containing protein1.6e-2733.22Show/hide
Query:  GLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSII---------------TD
        GLGNP     LR +VR+  P LVFLSETK         +R++SF     V   GKSGGL+LLWN D  V ++S S GHID+++                 
Subjt:  GLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSII---------------TD

Query:  KKIGANDGFTLDYR------------RDFNEIVSMTEKMGGVCRNESQMRG------------------CPIW-----------ERLDRFLINESMLNKC
        K     D + L  R             DFNEI+S+ EK GGV R+ S +                    C  W           ERLDR+  N+   N  
Subjt:  KKIGANDGFTLDYR------------RDFNEIVSMTEKMGGVCRNESQMRG------------------CPIW-----------ERLDRFLINESMLNKC

Query:  LNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGS--LPGIGIEAFQAKICSCLSRLNEWNKIR
         ++KV + + + SDHRPI A  +  +       K++  RFE  WL+   CRDI+T TW S  +P    ++       C  RL  WNK +
Subjt:  LNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGS--LPGIGIEAFQAKICSCLSRLNEWNKIR

A0A803PUH4 Uncharacterized protein4.5e-3033.23Show/hide
Query:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN
        MK L WNV GLGNP T RTL++LV R  P+LVF+SE++         +  L +D C  V + GKSGGL+LLW++  +  I S S  HIDS I  K+ G  
Subjt:  MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGAN

Query:  DGFTLDYRRDFNEIVSMTEKMGG------------VCRNESQMRGCP----------------IWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPIL
          FT  Y  DFNEI+   EK+GG            +  N S +R                   I+ERLDR   N    +     KV HL+ +SSDH PIL
Subjt:  DGFTLDYRRDFNEIVSMTEKMGG------------VCRNESQMRGCP----------------IWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPIL

Query:  ASWDF-----ELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIE-AFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKE-----------KE
            F     E    W      +  FE +W   + C +I+T +W          A + K+  C   L +WNK R          Y++           K+
Subjt:  ASWDF-----ELPRAWTCHKQRKIRFEESWLQIDGCRDIITGTWGSLPGIGIE-AFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKE-----------KE

Query:  LERLRQLDG-----LDGERRCWRSR
         + L+ L+      LD E + WR R
Subjt:  LERLRQLDG-----LDGERRCWRSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGTCTGTGCTGGAATGTTCCGGGTTTGGGGAACCCTGACACATTCCGAACGTTGCGCAATTTAGTGCGCAGATCGCAACCCCAGTTGGTTTTTCTTTCT
GAAACAAAAGGAAATCCAACTTTAGAAGGACGAGCAAAACGGGAACTTAGTTTCGATTGTTGTGTTAGTGTTGCTAGCACGGGGAAAAGTGGAGGTCTTATGCTA
TTATGGAACTCAGATTCAAATGTTAGGATTCAGTCTATGTCACCGGGACATATAGACTCAATTATTACAGATAAAAAGATTGGCGCGAATGATGGATTTACCTTG
GATTATCGGAGGGATTTTAATGAGATAGTGTCTATGACGGAAAAGATGGGTGGGGTGTGCAGGAATGAGAGCCAGATGCGGGGCTGCCCCATATGGGAACGCCTG
GATAGGTTCCTTATTAACGAGAGCATGCTTAATAAGTGTTTAAATCTTAAGGTCACACACCTTGAACTGCTTTCTTCAGATCATAGGCCCATTTTAGCTTCCTGG
GACTTTGAACTGCCACGCGCTTGGACATGTCACAAGCAGAGGAAGATAAGATTTGAGGAGAGTTGGTTACAGATTGATGGCTGTAGGGACATTATTACAGGGACT
TGGGGATCCTTGCCTGGGATTGGAATTGAGGCGTTTCAAGCAAAAATTTGTTCGTGCCTCTCTCGGCTTAATGAGTGGAATAAAATTAGATTGAACAGATCTCTT
AAAGGGGCTATTGCGTATAAGGAGAAAGAGCTTGAAAGACTTCGCCAACTAGATGGGCTAGATGGAGAGAGGAGATGCTGGAGATCGAGAAGGACCTGGGGACTT
TGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGTCTGTGCTGGAATGTTCCGGGTTTGGGGAACCCTGACACATTCCGAACGTTGCGCAATTTAGTGCGCAGATCGCAACCCCAGTTGGTTTTTCTTTCT
GAAACAAAAGGAAATCCAACTTTAGAAGGACGAGCAAAACGGGAACTTAGTTTCGATTGTTGTGTTAGTGTTGCTAGCACGGGGAAAAGTGGAGGTCTTATGCTA
TTATGGAACTCAGATTCAAATGTTAGGATTCAGTCTATGTCACCGGGACATATAGACTCAATTATTACAGATAAAAAGATTGGCGCGAATGATGGATTTACCTTG
GATTATCGGAGGGATTTTAATGAGATAGTGTCTATGACGGAAAAGATGGGTGGGGTGTGCAGGAATGAGAGCCAGATGCGGGGCTGCCCCATATGGGAACGCCTG
GATAGGTTCCTTATTAACGAGAGCATGCTTAATAAGTGTTTAAATCTTAAGGTCACACACCTTGAACTGCTTTCTTCAGATCATAGGCCCATTTTAGCTTCCTGG
GACTTTGAACTGCCACGCGCTTGGACATGTCACAAGCAGAGGAAGATAAGATTTGAGGAGAGTTGGTTACAGATTGATGGCTGTAGGGACATTATTACAGGGACT
TGGGGATCCTTGCCTGGGATTGGAATTGAGGCGTTTCAAGCAAAAATTTGTTCGTGCCTCTCTCGGCTTAATGAGTGGAATAAAATTAGATTGAACAGATCTCTT
AAAGGGGCTATTGCGTATAAGGAGAAAGAGCTTGAAAGACTTCGCCAACTAGATGGGCTAGATGGAGAGAGGAGATGCTGGAGATCGAGAAGGACCTGGGGACTT
TGCTAA
Protein sequenceShow/hide protein sequence
MKSLCWNVPGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDKKIGANDGFTL
DYRRDFNEIVSMTEKMGGVCRNESQMRGCPIWERLDRFLINESMLNKCLNLKVTHLELLSSDHRPILASWDFELPRAWTCHKQRKIRFEESWLQIDGCRDIITGT
WGSLPGIGIEAFQAKICSCLSRLNEWNKIRLNRSLKGAIAYKEKELERLRQLDGLDGERRCWRSRRTWGLC