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Moc03g07250 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g07250
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Genome locationchr3:5092361..5094251
RNA-Seq ExpressionMoc03g07250
SyntenyMoc03g07250
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016475609.1 PREDICTED: uncharacterized protein LOC107797251 [Nicotiana tabacum]9.6e-0840.82Show/hide
Query:  ESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMN
        E L++  R+     PSIEEPP LELK LP HL+ A   SF         K  +++ I   FPD Q+LA  +    D  PW+A+ ANY+ SG++P D++
Subjt:  ESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMN

XP_022143500.1 uncharacterized protein LOC111013378 [Momordica charantia]2.8e-0744.9Show/hide
Query:  MLKILDEALMEELEVEAMLE--HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGS
        +L++LDEA+++ L  EAMLE  + EV      AD+I +  E++Y        RS   +HESL + +   K LK SIEE P L LKA+P+H+KYAYLG+
Subjt:  MLKILDEALMEELEVEAMLE--HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGS

XP_022158578.1 uncharacterized protein LOC111025032 [Momordica charantia]1.6e-1052.63Show/hide
Query:  MLKILDEALMEELEVEAMLE-HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYL
        +L++LDEA+ME L  E MLE H   VD   D  D E   E++YL       RS   +HESL + + + K LKPS +EPP LELKALPQHLKYAYL
Subjt:  MLKILDEALMEELEVEAMLE-HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYL

XP_022159162.1 uncharacterized protein LOC111025586 [Momordica charantia]2.1e-0769.77Show/hide
Query:  IRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMNK
        IRG FPD Q+L +E L EE +EPWFAD ANYI SG+LP+DMNK
Subjt:  IRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMNK

XP_024980884.1 uncharacterized protein LOC112517738 [Cynara cardunculus var. scolymus]3.3e-0838.18Show/hide
Query:  NREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQ------------------GIRGKFPDVQMLAIEVLNEEDDEPWFADFANYI
        N E K   PSI  PP+LELK LP HLKYA+LG        +  KG   Q                   I   FPD ++L +     E   PWFAD ANY+
Subjt:  NREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQ------------------GIRGKFPDVQMLAIEVLNEEDDEPWFADFANYI

Query:  GSGMLPSDMN
          G+ PSD++
Subjt:  GSGMLPSDMN

TrEMBL top hitse value%identityAlignment
A0A1S4AG61 uncharacterized protein LOC1077972514.6e-0840.82Show/hide
Query:  ESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMN
        E L++  R+     PSIEEPP LELK LP HL+ A   SF         K  +++ I   FPD Q+LA  +    D  PW+A+ ANY+ SG++P D++
Subjt:  ESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIHGKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMN

A0A1S4D5G6 uncharacterized protein LOC1078260861.8e-0729.7Show/hide
Query:  SAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIH----------------------------------------------
        S +H  ESL +  R   L KPSIEEPP LELK LP H++Y +LGS   S+ PI+                                              
Subjt:  SAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIH----------------------------------------------

Query:  -------------------GKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLP
                            K  +++ I   FPD Q+LA  +    +D PW+ADFANY+  GM P
Subjt:  -------------------GKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLP

A0A6J1CNZ2 uncharacterized protein LOC1110133781.3e-0744.9Show/hide
Query:  MLKILDEALMEELEVEAMLE--HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGS
        +L++LDEA+++ L  EAMLE  + EV      AD+I +  E++Y        RS   +HESL + +   K LK SIEE P L LKA+P+H+KYAYLG+
Subjt:  MLKILDEALMEELEVEAMLE--HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGS

A0A6J1DWH3 uncharacterized protein LOC1110250327.6e-1152.63Show/hide
Query:  MLKILDEALMEELEVEAMLE-HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYL
        +L++LDEA+ME L  E MLE H   VD   D  D E   E++YL       RS   +HESL + + + K LKPS +EPP LELKALPQHLKYAYL
Subjt:  MLKILDEALMEELEVEAMLE-HLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYL

A0A6J1DZ22 uncharacterized protein LOC1110255861.0e-0769.77Show/hide
Query:  IRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMNK
        IRG FPD Q+L +E L EE +EPWFAD ANYI SG+LP+DMNK
Subjt:  IRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAGATTTTGGATGAAGCATTAATGGAAGAGTTGGAAGTAGAAGCCATGCTAGAGCATCTGGAAGTTGTTGACTATGGCAGTGATGCTGATGACATAGAG
AAAGGCCTTGAGGTTGTCTACCTATACATTATGAAAAGTTGTGAAAGGTCAGCGAAGCATATGCATGAGTCTTTAAACATCGTAAATCGTGAGTATAAATTGCTA
AAGCCATCTATAGAAGAGCCGCCAATCCTAGAGCTTAAAGCATTGCCCCAGCATCTGAAGTATGCCTACTTGGGTTCGTTTCATCATAGCAGCAGACCTATCCAT
GGAAAAGGAGCGAAGCTCCAGGGAATTAGAGGAAAATTTCCTGACGTACAAATGTTAGCTATTGAAGTTCTGAATGAGGAGGACGATGAGCCATGGTTTGCTGAT
TTTGCCAACTATATTGGCAGTGGGATGTTGCCATCTGACATGAACAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAGATTTTGGATGAAGCATTAATGGAAGAGTTGGAAGTAGAAGCCATGCTAGAGCATCTGGAAGTTGTTGACTATGGCAGTGATGCTGATGACATAGAG
AAAGGCCTTGAGGTTGTCTACCTATACATTATGAAAAGTTGTGAAAGGTCAGCGAAGCATATGCATGAGTCTTTAAACATCGTAAATCGTGAGTATAAATTGCTA
AAGCCATCTATAGAAGAGCCGCCAATCCTAGAGCTTAAAGCATTGCCCCAGCATCTGAAGTATGCCTACTTGGGTTCGTTTCATCATAGCAGCAGACCTATCCAT
GGAAAAGGAGCGAAGCTCCAGGGAATTAGAGGAAAATTTCCTGACGTACAAATGTTAGCTATTGAAGTTCTGAATGAGGAGGACGATGAGCCATGGTTTGCTGAT
TTTGCCAACTATATTGGCAGTGGGATGTTGCCATCTGACATGAACAAATAA
Protein sequenceShow/hide protein sequence
MLKILDEALMEELEVEAMLEHLEVVDYGSDADDIEKGLEVVYLYIMKSCERSAKHMHESLNIVNREYKLLKPSIEEPPILELKALPQHLKYAYLGSFHHSSRPIH
GKGAKLQGIRGKFPDVQMLAIEVLNEEDDEPWFADFANYIGSGMLPSDMNK