CuGenDBv2

Gene ID	Moc03g07620
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr3:5304907..5305536
RNA-Seq Expression	Moc03g07620
Synteny	Moc03g07620
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.1e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.0e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

A0A5A7TWB9 Gag/pol protein

1.0e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

A0A5A7V4M1 Gag/pol protein

1.0e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

A0A5D3CPJ6 Gag/pol protein

1.0e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

A0A5D3CSZ6 Gag/pol protein

1.0e-79

76.67

Show/hide

Query:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG
        M EG+SVREHVLN+MVHFNVAE NGAVIDE SQVSFILES P+SFL FRSNAVMNK+ YTLTTLLNELQT++SLMK  GQ+GEANV TS ++F+RGS+SG
Subjt:  MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTS-KRFNRGSSSG

Query:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC
        T+S PSSSG+K +KKKK  G+G+K + A A    K K A KG CFHCN +GHWKRNCPKYL EKKKA +GKYDLLVLET LVENDDSAWI+DSGATNHVC
Subjt:  TRSTPSSSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVC

Query:  SSFQGISSWR
        SSFQGISSWR
Subjt:  SSFQGISSWR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTTATAGACGAGCAGAGTCAGGTCAGC
TTTATTCTGGAATCTTTTCCGAAGAGTTTCCTTCCATTCCGCAGCAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCCTAAACGAGCTGCAGACC
TACCAGTCTCTTATGAAATGTAATGGACAAGAAGGGGAGGCAAATGTTGTCACCTCAAAGAGGTTCAACAGAGGATCGTCCTCTGGAACCAGGTCTACGCCTTCT
TCTTCTGGAAGTAAGACTTTTAAGAAAAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCAGCTCCTGCTGCCCAGAAAGGCAAGGTCAAGGTTGCAGAGAAA
GGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGTCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTA
TTGGAAACAAGTTTAGTGGAGAATGATGACTCCGCCTGGATACTGGATTCAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKEGSSVREHVLNLMVHFNVAESNGAVIDEQSQVSFILESFPKSFLPFRSNAVMNKLEYTLTTLLNELQTYQSLMKCNGQEGEANVVTSKRFNRGSSSGTRSTPS
SSGSKTFKKKKAAGKGSKPDSAPAAQKGKVKVAEKGKCFHCNMDGHWKRNCPKYLVEKKKANEGKYDLLVLETSLVENDDSAWILDSGATNHVCSSFQGISSWR

Moc03g07620 (gene) of Bitter gourd (OHB3-1) v2 genome