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Moc03g07850 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g07850
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr3:5510346..5514404
RNA-Seq ExpressionMoc03g07850
SyntenyMoc03g07850
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]3.8e-1941.58Show/hide
Query:  QEVRPIQFILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGS
        Q  R    ++++ T   SAS VDHLPLKTL I+PSLELALYALVKYSSQLN+LQLLHGNHS                         E   +    RILGS
Subjt:  QEVRPIQFILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGS

Query:  DESSFTLVASDYYDYLVMLATLVVGHTVEPMKLLFVSECGSLLIKGTGSCSVAFPHLLAYSFRAVSSASPLELVGLSWKAELHVMNYAGG
        +ESS TLV SDYYD                                   C                     ELVGLSWKAEL VMNYAGG
Subjt:  DESSFTLVASDYYDYLVMLATLVVGHTVEPMKLLFVSECGSLLIKGTGSCSVAFPHLLAYSFRAVSSASPLELVGLSWKAELHVMNYAGG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]5.6e-3980.36Show/hide
Query:  ILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGSDESSFTLV
        ++++ T   SASC+ HLPLKTL ILPSLELA+YALVKYSSQLN+LQLL GNHSGLAGRTT DKVVA+ALRVRELIDYLEIIGITTQCRILGSD SS  LV
Subjt:  ILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGSDESSFTLV

Query:  ASDYYDYLVMLA
        ASDYYDY V  A
Subjt:  ASDYYDYLVMLA
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.8e-1941.58Show/hide
Query:  QEVRPIQFILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGS
        Q  R    ++++ T   SAS VDHLPLKTL I+PSLELALYALVKYSSQLN+LQLLHGNHS                         E   +    RILGS
Subjt:  QEVRPIQFILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGS

Query:  DESSFTLVASDYYDYLVMLATLVVGHTVEPMKLLFVSECGSLLIKGTGSCSVAFPHLLAYSFRAVSSASPLELVGLSWKAELHVMNYAGG
        +ESS TLV SDYYD                                   C                     ELVGLSWKAEL VMNYAGG
Subjt:  DESSFTLVASDYYDYLVMLATLVVGHTVEPMKLLFVSECGSLLIKGTGSCSVAFPHLLAYSFRAVSSASPLELVGLSWKAELHVMNYAGG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.7e-3980.36Show/hide
Query:  ILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGSDESSFTLV
        ++++ T   SASC+ HLPLKTL ILPSLELA+YALVKYSSQLN+LQLL GNHSGLAGRTT DKVVA+ALRVRELIDYLEIIGITTQCRILGSD SS  LV
Subjt:  ILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHGNHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGSDESSFTLV

Query:  ASDYYDYLVMLA
        ASDYYDY V  A
Subjt:  ASDYYDYLVMLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATCACAAAAGTTACCAAGCTTACGACCTCGGCTTGGACGGAATGATGATCTTTAGGATGAGCTGGATTTTGCTGAGTAGGAGACTTGCAATGGCAGTA
TGGAGTACTTATCATAGTGGGAGCTTGACATCCGAGCAAGAGGTCAGACCAATCCAATTCATCCTGGTAATCGAAACTACGCTGCATAGTGCTTCATGTGTTGAC
CATCTTCCTTTGAAAACTTTAGTCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATAACCTACAGCTCCTGCATGGT
AATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGTTGCAATGGCTCTACGGGTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACT
CAGTGTAGGATATTGGGATCGGATGAAAGCTCTTTCACTTTAGTTGCCTCCGACTACTATGATTATCTGGTAATGTTGGCAACCTTAGTTGTGGGTCATACTGTA
GAGCCAATGAAACTTCTATTCGTTTCAGAATGTGGCTCTTTATTAATTAAAGGCACTGGCAGTTGCTCTGTTGCTTTTCCCCATCTTTTAGCATACTCTTTCCGG
GCAGTTTCTTCAGCATCTCCATTGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGAATTATGCTGGGGGGAAGTCCTCTATTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATCACAAAAGTTACCAAGCTTACGACCTCGGCTTGGACGGAATGATGATCTTTAGGATGAGCTGGATTTTGCTGAGTAGGAGACTTGCAATGGCAGTA
TGGAGTACTTATCATAGTGGGAGCTTGACATCCGAGCAAGAGGTCAGACCAATCCAATTCATCCTGGTAATCGAAACTACGCTGCATAGTGCTTCATGTGTTGAC
CATCTTCCTTTGAAAACTTTAGTCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATAACCTACAGCTCCTGCATGGT
AATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGTTGCAATGGCTCTACGGGTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACT
CAGTGTAGGATATTGGGATCGGATGAAAGCTCTTTCACTTTAGTTGCCTCCGACTACTATGATTATCTGGTAATGTTGGCAACCTTAGTTGTGGGTCATACTGTA
GAGCCAATGAAACTTCTATTCGTTTCAGAATGTGGCTCTTTATTAATTAAAGGCACTGGCAGTTGCTCTGTTGCTTTTCCCCATCTTTTAGCATACTCTTTCCGG
GCAGTTTCTTCAGCATCTCCATTGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGAATTATGCTGGGGGGAAGTCCTCTATTGACTGA
Protein sequenceShow/hide protein sequence
MFDHKSYQAYDLGLDGMMIFRMSWILLSRRLAMAVWSTYHSGSLTSEQEVRPIQFILVIETTLHSASCVDHLPLKTLVILPSLELALYALVKYSSQLNNLQLLHG
NHSGLAGRTTLDKVVAMALRVRELIDYLEIIGITTQCRILGSDESSFTLVASDYYDYLVMLATLVVGHTVEPMKLLFVSECGSLLIKGTGSCSVAFPHLLAYSFR
AVSSASPLELVGLSWKAELHVMNYAGGKSSID