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Moc03g08060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g08060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:5632890..5633240
RNA-Seq ExpressionMoc03g08060
SyntenyMoc03g08060
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY87521.1 hypothetical protein Acr_05g0011600 [Actinidia rufa]9.9e-2652.89Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS
        MP+ R  NFDE++N   L +NLDLL+E R  + LR A Y+ ++A YYN RVK R+F P DL+L+KV Q  K      L P  EGPYKV+K+ RPG Y L 
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS

Query:  DLNGRRLPHSWNAEHLQIYFQ
        D NG+ L H WNAEHL+ Y+Q
Subjt:  DLNGRRLPHSWNAEHLQIYFQ

GFZ19982.1 hypothetical protein Acr_28g0006870 [Actinidia rufa]4.4e-2652.07Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS
        MP+ R+ NFD+++N   L +NLDLL+E+R  ++LR A Y+N++A YYN RVK R+F PGDL+L+KV    +      L P  EGPYKV+K+ R G Y L 
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS

Query:  DLNGRRLPHSWNAEHLQIYFQ
        DLNG+ L H WNAEHL+ Y+Q
Subjt:  DLNGRRLPHSWNAEHLQIYFQ

XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]1.5e-4275.86Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        MPT RVENFD QTNSEA L+NLDLL+E+RS+SQL+LAEYQNRMA YYN R +VRTFKPGDL LKKVMQ V++LEPN EGPY+VLK++RP AY LSDLNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAE L++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

XP_022156271.1 uncharacterized protein LOC111023203 [Momordica charantia]4.7e-4478.45Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        M TPRVENF+EQTNSEALLVNLDLL E+RSHSQLRLAEY NRMA YYNARVKVR FKPGDL+LKKVMQ V++L+PN EGPY+VL+ILRP AY    LNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAEHL++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]1.4e-4884.48Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        MPTPRVENFDEQ NSEALLVNLDLL+E+RSHSQLRLAEYQNRMA YYNARVKVRTFKP DL+LKKVMQ V +LEPN EGPY+VLKILRP AY LSDLNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAEHL++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

TrEMBL top hitse value%identityAlignment
A0A2N9GP47 Ribonuclease H2.8e-2652.5Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKS-----LEPNGEGPYKVLKILRPGAYQLS
        + T R   +DEQ N E L +NLDL+ E R  ++ R+  YQ RMA +YN+RVK R    GDL+L+KV    K+     L PN EGPYKV++I RPG Y L 
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKS-----LEPNGEGPYKVLKILRPGAYQLS

Query:  DLNGRRLPHSWNAEHLQIYF
        D+NGRRLPH WNAEHL+ Y+
Subjt:  DLNGRRLPHSWNAEHLQIYF

A0A6J1DS38 uncharacterized protein LOC1110230177.3e-4375.86Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        MPT RVENFD QTNSEA L+NLDLL+E+RS+SQL+LAEYQNRMA YYN R +VRTFKPGDL LKKVMQ V++LEPN EGPY+VLK++RP AY LSDLNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAE L++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

A0A6J1DUF4 uncharacterized protein LOC1110232032.3e-4478.45Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        M TPRVENF+EQTNSEALLVNLDLL E+RSHSQLRLAEY NRMA YYNARVKVR FKPGDL+LKKVMQ V++L+PN EGPY+VL+ILRP AY    LNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAEHL++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

A0A6J1DWM2 Ribonuclease H6.9e-4984.48Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR
        MPTPRVENFDEQ NSEALLVNLDLL+E+RSHSQLRLAEYQNRMA YYNARVKVRTFKP DL+LKKVMQ V +LEPN EGPY+VLKILRP AY LSDLNGR
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGR

Query:  RLPHSWNAEHLQIYFQ
        +LPH WNAEHL++Y+Q
Subjt:  RLPHSWNAEHLQIYFQ

A0A7J0HA34 Ribonuclease H2.1e-2652.07Show/hide
Query:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS
        MP+ R+ NFD+++N   L +NLDLL+E+R  ++LR A Y+N++A YYN RVK R+F PGDL+L+KV    +      L P  EGPYKV+K+ R G Y L 
Subjt:  MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVK-----SLEPNGEGPYKVLKILRPGAYQLS

Query:  DLNGRRLPHSWNAEHLQIYFQ
        DLNG+ L H WNAEHL+ Y+Q
Subjt:  DLNGRRLPHSWNAEHLQIYFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGACACCCCGAGTTGAGAATTTCGACGAACAAACCAACAGCGAAGCTCTCCTTGTGAATCTTGACCTACTCAAGGAGGAAAGATCTCACTCCCAGCTCAGG
CTAGCAGAGTATCAGAACCGTATGGCTTGCTACTACAATGCCAGAGTAAAAGTCAGAACGTTCAAGCCTGGCGACCTCATCCTCAAAAAGGTAATGCAGCCTGTC
AAATCACTCGAGCCGAACGGAGAAGGTCCATACAAAGTCCTGAAAATACTCCGACCTGGAGCGTATCAGTTGTCTGACCTCAATGGGAGACGACTCCCCCACTCA
TGGAACGCCGAGCATTTGCAAATTTATTTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGACACCCCGAGTTGAGAATTTCGACGAACAAACCAACAGCGAAGCTCTCCTTGTGAATCTTGACCTACTCAAGGAGGAAAGATCTCACTCCCAGCTCAGG
CTAGCAGAGTATCAGAACCGTATGGCTTGCTACTACAATGCCAGAGTAAAAGTCAGAACGTTCAAGCCTGGCGACCTCATCCTCAAAAAGGTAATGCAGCCTGTC
AAATCACTCGAGCCGAACGGAGAAGGTCCATACAAAGTCCTGAAAATACTCCGACCTGGAGCGTATCAGTTGTCTGACCTCAATGGGAGACGACTCCCCCACTCA
TGGAACGCCGAGCATTTGCAAATTTATTTTCAATGA
Protein sequenceShow/hide protein sequence
MPTPRVENFDEQTNSEALLVNLDLLKEERSHSQLRLAEYQNRMACYYNARVKVRTFKPGDLILKKVMQPVKSLEPNGEGPYKVLKILRPGAYQLSDLNGRRLPHS
WNAEHLQIYFQ