CuGenDBv2

Gene ID	Moc03g14760
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr3:9916992..9931763
RNA-Seq Expression	Moc03g14760
Synteny	Moc03g14760
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-20

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-97

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-20

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-97

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-20

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-97

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-20

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-97

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.0e-20

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-97

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.5e-98

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

A0A5A7SMH8 Gag/pol protein

4.9e-21

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

A0A5A7SMH8 Gag/pol protein

6.5e-98

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

A0A5A7TWB9 Gag/pol protein

4.9e-21

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

A0A5A7TWB9 Gag/pol protein

6.5e-98

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

A0A5A7TZD7 Gag/pol protein

4.9e-21

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

A0A5D3CPJ6 Gag/pol protein

4.9e-21

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

A0A5D3CPJ6 Gag/pol protein

6.5e-98

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

A0A5D3CSZ6 Gag/pol protein

4.9e-21

56.6

Show/hide

Query:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM
        +V+NE+S+E T  STRVV++    TRVV   S++R +H PQ LR PRRSGR+ + P RY+ LTET  VI D  +EDPLT+KKAMED DKD+ +KAM+LE+
Subjt:  VVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAMDLEM

Query:  ESMCYH
        ESM ++
Subjt:  ESMCYH

A0A5D3CSZ6 Gag/pol protein

6.5e-98

60.88

Show/hide

Query:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN
        ++FVL ++CPQ PA N T  VR  Y+RW KAN+KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ +FGQ S Q +H+ALK+IYN+RM EG+SV+EHVLN
Subjt:  VKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLN

Query:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------
        +MVHFNVAE NGAV+DE SQ+SFILESLP+SFL FR+N VMNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  P        
Subjt:  LMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATS-KRFNRGSSSGTKLRP--------

Query:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS
                        K  K   A KG CFHCN +GHWKRNCPKYLAEKKKA +                        GATNHVCSSFQGISSWRQL+  
Subjt:  -------------LLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANE------------------------GATNHVCSSFQGISSWRQLDAS

Query:  EMTLKVGTGEVVSAVVV
        EMT++VGTG VVSA+ V
Subjt:  EMTLKVGTGEVVSAVVV

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-06

24.75

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Query:  WVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLNLMVHFNVAESN-GAVMDEQSQISFILE
        W   +++A   I   +SD +     D  TA+ I   L+S++   +   +    K +Y   M EG++   H LN+        +N G  ++E+ +   +L 
Subjt:  WVKANDKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLNLMVHFNVAESN-GAVMDEQSQISFILE

Query:  SLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATSKRFNRGSSSGTKLRPLLLKKGKVKVAEKGK---CFHCNMDGHWKRNCP
        SLP S+      ++  K    L  + + L   + + K    +G+A +   +  +   SS    R     +GK K   K +   C++CN  GH+KR+CP
Subjt:  SLPKSFLPFRNNVVMNKLEYTLTTLLNELQTYQSLMKCKGQEGEANVATSKRFNRGSSSGTKLRPLLLKKGKVKVAEKGK---CFHCNMDGHWKRNCP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCGGTGGTGGTGTTCGAGGGGAATTCATTGAAGAAACGTTCTTCAAAAGTTTGTGGTTCCCTTGTA
TTTTTCTTCTTTAAAACTCGATTTTGTATCCCGAAAATCAGCAACAAAAATTCGTTTTCGCTCCGGGATTCACATCCCTTCAATTGGTATCAGCGCCAGTCGTTC
GTGGCGTCAGATTGGGCGAAAATTGCAGAAAACAGCGAAGAAGACGAAGCAGACTGCGCAGACAGCGCCATGGCGCTGCGGGACAGCACACAGTGCCATGACGCC
ATGCCAGGGCGCCGCGGCGCTGCCCTTAGGCGCCGAGGCGCTGTCCCAGGTGTTTTCGACACGGTTCCGAGGCTTCGGTTCGCGGTTCGAGCGCGGATGCAGTCG
GATTATTGGGGTGGACCTCTGAGGTCCGAAAATGTTGGGTCACACTTACGAGGAATTGTTAAGTTCGTCTTACAACAGGATTGTCCTCAAGCTCCTGCGCCTAAC
GTCACTGTGGCGGTGCGCAACGCCTATGACAGGTGGGTCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGTATATCTGATGTGCTTGCCAAGAAGCAC
GAGGATACGGTCACCGCTAAGGAGATCATGGACTCGCTTCAGAGCATTTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTCATTTACAACTCT
CGCATGAAGGAGGGTTCATCAGTGCAAGAACATGTTCTCAACCTGATGGTCCACTTCAACGTGGCTGAGTCGAACGGGGCCGTCATGGACGAGCAGAGTCAGATC
AGCTTTATTCTGGAATCTCTTCCAAAGAGTTTCCTTCCATTCCGCAACAATGTGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCCTAAACGAGCTGCAG
ACCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAACAGAGGATCGTCCTCTGGAACTAAGTTGCGCCCT
CTTCTTCTGAAAAAAGGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAACATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAA
AAGAAGAAAGCCAACGAAGGAGCCACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCTCAGAGATGACTCTCAAGGTCGGA
ACGGGAGAGGTCGTCTCAGCTGTGGTGGTAGTAATTAACGAGATTTCCGAAGAGGCTACAAACACGTCAACAAGAGTTGTTGATCAAACTGGCACTACAACAAGA
GTTGTTGATGAAGCCAGCACATCGCGTCAGTCGCATCCACCTCAAGTGTTGAGGGTGCCTCGACGTAGTGGCAGGATTGTGTCACAACCTGACCGCTACGTGGGT
TTAACTGAAACTCAAGTTGTCATACCTGATGACGGCGTCGAGGATCCATTGACCTATAAGAAGGCAATGGAAGATACTGACAAGGACAAATTGGTCAAAGCAATG
GACCTGGAAATGGAGTCGATGTGCTACCACAAGCACGATCCCGAGACCCAAGAAGATAGCGAGGAAGATCCGGTGGTGGTGTTCAAGGGGAATTCACTGAAGAAA
CGTTCTTCAAAGGCACAGGATGATCGAGAAAAATCCAGCCCCCCCCTCTCGATTTCTGCTGCCGGCCACCATAGCTCCGGCGACCGCGCCACACGAACGACGCCC
CAGTTTTCGGCGGTGTTTCTCAATGCGAGCAGCGGCGGCGAGCGAACAACAGCCGACGATTCTGCACGCAGCGGCGCAGTGACGGTGATTCCTTGGACCCAGCGC
CCGCACGATCTGATAGCCGCCTGCCTCCGACCACCAGATCCGAGGCTCTCCCACGAACCCAGCGCCCGACAACTCGATTGTGGTCAAAATCGAGCGGACCACGAG
CAAGTCTGGCGAGTTCCAAACGACGATGCGCAACCCCTCAAAACAGCAGCGGTTCTAGTCAGATCCGAACGTCTCGACCGTAGCTTTCCCTTCGACGTTACGTTG
TTCGACACCTCGTACCTGAAGTTTTCGGCGGAGCTTAGGAGAGTTAGGAAAATATCTTGTGTCATGATTATTGGATGTGCCTTGAAAGTTGTTGCTCGTGGTTGT
GTCGTGATGGGCGTTGTGGTGGTTGCTGTTATTAGGGAAGTAGTATTGAAATCTTGGTTGGAGGCTAGAAATGTTATGTGGAGTTATGAAAGTTATGAAGTGAAT
GGGCCAGTGTCAGGGCCTCGGTTTGCAGGTATCGAGCTAGCTCGTGGGATGGTGATGGCGAGGAGGAGGCTTGATCGGAAAGACCATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MHDPETQEDSEEDPVVVFEGNSLKKRSSKVCGSLVFFFFKTRFCIPKISNKNSFSLRDSHPFNWYQRQSFVASDWAKIAENSEEDEADCADSAMALRDSTQCHDA
MPGRRGAALRRRGAVPGVFDTVPRLRFAVRARMQSDYWGGPLRSENVGSHLRGIVKFVLQQDCPQAPAPNVTVAVRNAYDRWVKANDKAKVYILASISDVLAKKH
EDTVTAKEIMDSLQSIFGQPSSQARHEALKFIYNSRMKEGSSVQEHVLNLMVHFNVAESNGAVMDEQSQISFILESLPKSFLPFRNNVVMNKLEYTLTTLLNELQ
TYQSLMKCKGQEGEANVATSKRFNRGSSSGTKLRPLLLKKGKVKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEGATNHVCSSFQGISSWRQLDASEMTLKVG
TGEVVSAVVVVINEISEEATNTSTRVVDQTGTTTRVVDEASTSRQSHPPQVLRVPRRSGRIVSQPDRYVGLTETQVVIPDDGVEDPLTYKKAMEDTDKDKLVKAM
DLEMESMCYHKHDPETQEDSEEDPVVVFKGNSLKKRSSKAQDDREKSSPPLSISAAGHHSSGDRATRTTPQFSAVFLNASSGGERTTADDSARSGAVTVIPWTQR
PHDLIAACLRPPDPRLSHEPSARQLDCGQNRADHEQVWRVPNDDAQPLKTAAVLVRSERLDRSFPFDVTLFDTSYLKFSAELRRVRKISCVMIIGCALKVVARGC
VVMGVVVVAVIREVVLKSWLEARNVMWSYESYEVNGPVSGPRFAGIELARGMVMARRRLDRKDH

Moc03g14760 (gene) of Bitter gourd (OHB3-1) v2 genome