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Moc03g15090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g15090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:10177954..10180463
RNA-Seq ExpressionMoc03g15090
SyntenyMoc03g15090
Gene Ontology termsGO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEW02864.1 putative receptor-like protein kinase At4g00960 [Tanacetum cinerariifolium]3.9e-1446.15Show/hide
Query:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV
        D+GS   GNG  SK+ GIGDVC++ G     VL+G+K+IP L  NL+S GKLDDDG+   F  G W L R   ++  G K S +YL++ ++
Subjt:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV

KAF5762160.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.3e-1338.89Show/hide
Query:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS
        GN  +SK+ G+GDVCLK   G E VL  +K++  +  NL+S G LDDDGY S F  G W+L R S +V  G + S +Y++  ++ T      +H   D  
Subjt:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS

Query:  RGDLKESR
          +L   R
Subjt:  RGDLKESR

KAF5811941.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.3e-1338.89Show/hide
Query:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS
        GN  +SK+ G+GDVCLK   G E VL  +K++  +  NL+S G LDDDGY S F  G W+L R S +V  G + S +Y++  ++ T      +H   D  
Subjt:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS

Query:  RGDLKESR
          +L   R
Subjt:  RGDLKESR

KFK32108.1 hypothetical protein AALP_AA6G199700 [Arabis alpina]1.1e-1344.05Show/hide
Query:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV
        GN +++KV GIGD+CL+   G   +L+G+K++P +  NL+S GKLDD+G+ S F GG W+L R S ++  G K S+ Y  + +V
Subjt:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV

VVB04180.1 unnamed protein product [Arabis nemorensis]1.5e-1347.62Show/hide
Query:  YGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY
        YGS   GN +V+KV GIGD+CL+   G   +L+G+K++P +  NL+S GKLDD+G++S F GG W+L R S ++  G K S  Y
Subjt:  YGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY

TrEMBL top hitse value%identityAlignment
A0A087GQF6 Uncharacterized protein5.5e-1444.05Show/hide
Query:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV
        GN +++KV GIGD+CL+   G   +L+G+K++P +  NL+S GKLDD+G+ S F GG W+L R S ++  G K S+ Y  + +V
Subjt:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV

A0A251SV86 Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein2.1e-1338.89Show/hide
Query:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS
        GN  +SK+ G+GDVCLK   G E VL  +K++  +  NL+S G LDDDGY S F  G W+L R S +V  G + S +Y++  ++ T      +H   D  
Subjt:  GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGS

Query:  RGDLKESR
          +L   R
Subjt:  RGDLKESR

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-1338.3Show/hide
Query:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTG
        D+G+   GN +VSK+ G+GD+CL+   G + +LR ++++P +  NL+S GKLDD+GY++ F  G W+L + S +V  G+K   +Y  + ++  G
Subjt:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTG

A0A565BS43 Uncharacterized protein7.2e-1447.62Show/hide
Query:  YGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY
        YGS   GN +V+KV GIGD+CL+   G   +L+G+K++P +  NL+S GKLDD+G++S F GG W+L R S ++  G K S  Y
Subjt:  YGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY

A0A5N6N2Q3 Integrase catalytic domain-containing protein4.6e-1344.71Show/hide
Query:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY
        D+GS   GN  +SK+ G+GD+CLK   G E VL  +K++P +  NL+S G LD+DGY + F  G W+L R S +V  G + S +Y
Subjt:  DYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-1235.48Show/hide
Query:  DFDCR---RDYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV
        D  CR    D+G+   GN S SK+ GIGD+C+K   G   VL+ ++++P L  NL+S   LD DGY S F    W L + S ++  G  R  +Y +  E+
Subjt:  DFDCR---RDYGS---GNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEV

Query:  VTGFERQKMHKAADGSRGDLKESR
          G    +++ A D    DL   R
Subjt:  VTGFERQKMHKAADGSRGDLKESR

Arabidopsis top hitse value%identityAlignment
AT3G21000.1 Gag-Pol-related retrotransposon family protein8.7e-0437.74Show/hide
Query:  GSGNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYS
        G+ +G+V  V G GDV +++ EG +  +R + ++P L  N+LS GK+    YS
Subjt:  GSGNGSVSKVRGIGDVCLKIGEGAEFVLRGIKYIPSLIFNLLSVGKLDDDGYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCGTCGATCAAAGCCGTAGAGTTTGCCATTGGACTTCGTCGTCAGAGTCCTTTGTTGTTGTCGCTATCGATCGAAGCCATGGAGTTCGCCATCCTCCAT
TGCTGTCTCCATCAATCGAAGGTGTGGAGTTGTCGTCCTCCACTTGCTGTCGCTGTTAATCGAAGTCGTGAAGTTCGCCGTCCTCTGTTGTTGTCGCTATCGATG
GAAGCTGTGGACTTCGACTGTCGCCGTGATTACGGCTCGGGGAATGGGAGTGTCTCCAAGGTGAGAGGAATAGGAGATGTTTGTTTGAAGATAGGAGAAGGGGCC
GAGTTTGTGCTGCGAGGTATCAAGTATATTCCTAGCTTAATATTTAATTTGTTATCTGTTGGGAAGCTAGACGATGATGGCTACAGTAGTGAGTTTGTTGGGGGT
TGCTGGGAGCTCAAGAGGGAATCCAGCTTGGTGGTGATAGGCCATAAGAGATCCTATATTTATTTGTCAGAGTTTGAGGTTGTCACGGGATTTGAGAGACAGAAG
ATGCACAAGGCTGCAGATGGTTCAAGGGGAGACTTGAAAGAATCAAGAGCATTAATAGTCAAGACAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCGTCGATCAAAGCCGTAGAGTTTGCCATTGGACTTCGTCGTCAGAGTCCTTTGTTGTTGTCGCTATCGATCGAAGCCATGGAGTTCGCCATCCTCCAT
TGCTGTCTCCATCAATCGAAGGTGTGGAGTTGTCGTCCTCCACTTGCTGTCGCTGTTAATCGAAGTCGTGAAGTTCGCCGTCCTCTGTTGTTGTCGCTATCGATG
GAAGCTGTGGACTTCGACTGTCGCCGTGATTACGGCTCGGGGAATGGGAGTGTCTCCAAGGTGAGAGGAATAGGAGATGTTTGTTTGAAGATAGGAGAAGGGGCC
GAGTTTGTGCTGCGAGGTATCAAGTATATTCCTAGCTTAATATTTAATTTGTTATCTGTTGGGAAGCTAGACGATGATGGCTACAGTAGTGAGTTTGTTGGGGGT
TGCTGGGAGCTCAAGAGGGAATCCAGCTTGGTGGTGATAGGCCATAAGAGATCCTATATTTATTTGTCAGAGTTTGAGGTTGTCACGGGATTTGAGAGACAGAAG
ATGCACAAGGCTGCAGATGGTTCAAGGGGAGACTTGAAAGAATCAAGAGCATTAATAGTCAAGACAAATTAG
Protein sequenceShow/hide protein sequence
MLPSIKAVEFAIGLRRQSPLLLSLSIEAMEFAILHCCLHQSKVWSCRPPLAVAVNRSREVRRPLLLSLSMEAVDFDCRRDYGSGNGSVSKVRGIGDVCLKIGEGA
EFVLRGIKYIPSLIFNLLSVGKLDDDGYSSEFVGGCWELKRESSLVVIGHKRSYIYLSEFEVVTGFERQKMHKAADGSRGDLKESRALIVKTN