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Moc03g15260 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g15260
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr3:10234639..10236769
RNA-Seq ExpressionMoc03g15260
SyntenyMoc03g15260
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149799.1 uncharacterized protein LOC111018145 [Momordica charantia]6.2e-6562.33Show/hide
Query:  QVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVREL
        QVGVVPP P    + +  P VPPAV  VNPQ+ LL +ALQA INN  GVGGVQAQPP+H H  Q EA+FIKD K YGP TFD         ++   +REL
Subjt:  QVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVREL

Query:  EALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPT
        EALY YL                           VA+DH NVP+PW+RFKDLLYDYYYPETVKD KEAEFLHL QGTL+VAQYE KF ELS FALELIPT
Subjt:  EALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPT

Query:  EVVKIKRFVKGLRKGIRGPVDLQ
        E +KIKRFVKGLRKGIRGPVDLQ
Subjt:  EVVKIKRFVKGLRKGIRGPVDLQ

XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]4.4e-6353.33Show/hide
Query:  PAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------
        P    +  +VALL +ALQA I+N+   G  QA  PR   ALQ EA+FI+D + YGPPTF+G   K         +RELEALY YL               
Subjt:  PAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------

Query:  ------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL
                      +DH N P+ W+  KDLLYDYY+P+T+KD KE EFLHLTQ TL VAQYE KF E SRFAL+LIPTE  KIKRFV+GL KGI+GP+DL
Subjt:  ------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL

Query:  QRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYADQPFR-APQR
        QRP TY EA++G+L+MDKDV  KAQP  +VG SSGVKRKVPP  + QP + +PQ+
Subjt:  QRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYADQPFR-APQR

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.3e-7566.38Show/hide
Query:  GVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWS
        GVGGVQA PP+H H  Q EA+FIKD K YGPPTFDG        +    +RELEALYAYL                            A+D+ NVP+PW+
Subjt:  GVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWS

Query:  RFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQ
        RFK+LLYDYYYPETVKD KEAEFLHL QGTL+VAQYE KF ELSRFALELIPTE +KIKRFVKGLRKGIRGPVDLQRP TY EAVRG+L+MDKDV NKA 
Subjt:  RFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQ

Query:  PLLEVGSSSGVKRKVPPNYADQPFRAPQR
        PL EVGSSSGVKRK P  YAD   RAPQR
Subjt:  PLLEVGSSSGVKRKVPPNYADQPFRAPQR

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]2.6e-9262.01Show/hide
Query:  MPSRRSMRLRADVGPALGGENVADPPPPAVGGQVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAK
        MP RRSMRLRADV PA  GENVADPPPP +G Q GVVPP P                P    ++AL        INNT GVGG Q QPPRH H  Q EA+
Subjt:  MPSRRSMRLRADVGPALGGENVADPPPPAVGGQVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAK

Query:  FIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEA
        FIKD K YGPPTF GG  +     +   VRELEALYAYL                             +DH NVPVPW+RFK+LLYD+YY ETV+D KE 
Subjt:  FIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEA

Query:  EFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYAD
        EFLHL QGTLTVAQYE KF ELS FALELIPTE +KIKRFVKGL KGIRG VDLQRP TY EAVRG+LIMDKDV N+ QPL+EVGSS GVKRKVPP YAD
Subjt:  EFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYAD

Query:  QPFRAPQR
        QPFRAPQR
Subjt:  QPFRAPQR

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]2.5e-6669.7Show/hide
Query:  VPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL-----------------
        VP VNPQVALLA+ALQA INNT GVGG QA PPRHFH  Q EA+FIKD K YGPPTFDGG  +    ++   VRELEALYAYL                 
Subjt:  VPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL-----------------

Query:  ----------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL
                  VA+DH NVPVPW+RFKDLLYDYYYPETVKDTKEAEFLHL QGTLTVAQYE KF ELSRFALE IPTE +KIKRFVKGLRKGIRGPVDL
Subjt:  ----------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL

TrEMBL top hitse value%identityAlignment
A0A6J1D841 uncharacterized protein LOC1110181453.0e-6562.33Show/hide
Query:  QVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVREL
        QVGVVPP P    + +  P VPPAV  VNPQ+ LL +ALQA INN  GVGGVQAQPP+H H  Q EA+FIKD K YGP TFD         ++   +REL
Subjt:  QVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVREL

Query:  EALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPT
        EALY YL                           VA+DH NVP+PW+RFKDLLYDYYYPETVKD KEAEFLHL QGTL+VAQYE KF ELS FALELIPT
Subjt:  EALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPT

Query:  EVVKIKRFVKGLRKGIRGPVDLQ
        E +KIKRFVKGLRKGIRGPVDLQ
Subjt:  EVVKIKRFVKGLRKGIRGPVDLQ

A0A6J1DCW8 uncharacterized protein LOC1110196032.1e-6353.33Show/hide
Query:  PAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------
        P    +  +VALL +ALQA I+N+   G  QA  PR   ALQ EA+FI+D + YGPPTF+G   K         +RELEALY YL               
Subjt:  PAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------

Query:  ------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL
                      +DH N P+ W+  KDLLYDYY+P+T+KD KE EFLHLTQ TL VAQYE KF E SRFAL+LIPTE  KIKRFV+GL KGI+GP+DL
Subjt:  ------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL

Query:  QRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYADQPFR-APQR
        QRP TY EA++G+L+MDKDV  KAQP  +VG SSGVKRKVPP  + QP + +PQ+
Subjt:  QRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYADQPFR-APQR

A0A6J1DUM2 uncharacterized protein LOC1110232476.4e-7666.38Show/hide
Query:  GVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWS
        GVGGVQA PP+H H  Q EA+FIKD K YGPPTFDG        +    +RELEALYAYL                            A+D+ NVP+PW+
Subjt:  GVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWS

Query:  RFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQ
        RFK+LLYDYYYPETVKD KEAEFLHL QGTL+VAQYE KF ELSRFALELIPTE +KIKRFVKGLRKGIRGPVDLQRP TY EAVRG+L+MDKDV NKA 
Subjt:  RFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQ

Query:  PLLEVGSSSGVKRKVPPNYADQPFRAPQR
        PL EVGSSSGVKRK P  YAD   RAPQR
Subjt:  PLLEVGSSSGVKRKVPPNYADQPFRAPQR

A0A6J1DVA0 uncharacterized protein LOC1110234241.3e-9262.01Show/hide
Query:  MPSRRSMRLRADVGPALGGENVADPPPPAVGGQVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAK
        MP RRSMRLRADV PA  GENVADPPPP +G Q GVVPP P                P    ++AL        INNT GVGG Q QPPRH H  Q EA+
Subjt:  MPSRRSMRLRADVGPALGGENVADPPPPAVGGQVGVVPPIPLVETQGQVNPPVPPAVPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAK

Query:  FIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEA
        FIKD K YGPPTF GG  +     +   VRELEALYAYL                             +DH NVPVPW+RFK+LLYD+YY ETV+D KE 
Subjt:  FIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL---------------------------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEA

Query:  EFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYAD
        EFLHL QGTLTVAQYE KF ELS FALELIPTE +KIKRFVKGL KGIRG VDLQRP TY EAVRG+LIMDKDV N+ QPL+EVGSS GVKRKVPP YAD
Subjt:  EFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYAD

Query:  QPFRAPQR
        QPFRAPQR
Subjt:  QPFRAPQR

A0A6J1DXQ7 uncharacterized protein LOC1110250881.2e-6669.7Show/hide
Query:  VPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL-----------------
        VP VNPQVALLA+ALQA INNT GVGG QA PPRHFH  Q EA+FIKD K YGPPTFDGG  +    ++   VRELEALYAYL                 
Subjt:  VPHVNPQVALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYL-----------------

Query:  ----------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL
                  VA+DH NVPVPW+RFKDLLYDYYYPETVKDTKEAEFLHL QGTLTVAQYE KF ELSRFALE IPTE +KIKRFVKGLRKGIRGPVDL
Subjt:  ----------VAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEAEFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACTCATCAACGCTGCTAACTGCCACAGAGGAGGACGTTTTCGGTCTGGTGGTGGGTCGTGCCACCACACGGGAACAGCTGCGACAGTTTGCCATTCGAGTAGTGG
TCCCGGTCTGCCTCCTTGTCATCACCAGACAATGCCATCCCGTCGTAGTATGAGGTTGCGTGCAGACGTCGGCCCAGCCCTCGGAGGTGAGAATGTGGCGGACCCACCGC
CCCCTGCGGTTGGTGGTCAGGTAGGGGTAGTTCCTCCAATTCCTCTAGTAGAGACTCAGGGGCAGGTGAATCCTCCAGTTCCCCCGGCAGTTCCCCATGTGAACCCTCAG
GTGGCGTTGCTTGCGAAGGCGTTGCAGGCGCCAATCAATAACACAACTGGGGTTGGCGGTGTACAAGCTCAGCCACCCCGACATTTTCATGCTCTTCAGGGCGAGGCCAA
ATTCATCAAGGATTTGAAGCATTACGGACCCCCTACCTTTGACGGAGGACGGAGGAAGCGAGAATACAACAGCAGCAGAAGAGGGGTCAGAGAGTTGGAAGCCCTTTACG
CGTATCTAGTGGCAAAAGACCATGTTAATGTACCAGTTCCGTGGTCAAGGTTCAAGGACTTGTTGTACGACTACTATTACCCGGAGACTGTGAAAGATACGAAGGAGGCA
GAATTCCTCCATCTCACCCAAGGAACCTTGACGGTAGCACAATATGAATGGAAGTTTATGGAACTCTCTCGTTTTGCTCTGGAATTAATTCCCACCGAGGTAGTGAAGAT
CAAAAGGTTTGTTAAAGGCTTACGCAAGGGGATCAGAGGACCAGTGGATCTTCAGCGACCCGCCACCTACACGGAAGCAGTTAGGGGCTCTTTAATTATGGATAAGGATG
TCTTTAACAAGGCCCAACCTCTACTAGAAGTCGGTTCATCTTCAGGTGTGAAAAGGAAAGTCCCTCCGAATTATGCCGACCAGCCATTTAGAGCACCCCAGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACTCATCAACGCTGCTAACTGCCACAGAGGAGGACGTTTTCGGTCTGGTGGTGGGTCGTGCCACCACACGGGAACAGCTGCGACAGTTTGCCATTCGAGTAGTGG
TCCCGGTCTGCCTCCTTGTCATCACCAGACAATGCCATCCCGTCGTAGTATGAGGTTGCGTGCAGACGTCGGCCCAGCCCTCGGAGGTGAGAATGTGGCGGACCCACCGC
CCCCTGCGGTTGGTGGTCAGGTAGGGGTAGTTCCTCCAATTCCTCTAGTAGAGACTCAGGGGCAGGTGAATCCTCCAGTTCCCCCGGCAGTTCCCCATGTGAACCCTCAG
GTGGCGTTGCTTGCGAAGGCGTTGCAGGCGCCAATCAATAACACAACTGGGGTTGGCGGTGTACAAGCTCAGCCACCCCGACATTTTCATGCTCTTCAGGGCGAGGCCAA
ATTCATCAAGGATTTGAAGCATTACGGACCCCCTACCTTTGACGGAGGACGGAGGAAGCGAGAATACAACAGCAGCAGAAGAGGGGTCAGAGAGTTGGAAGCCCTTTACG
CGTATCTAGTGGCAAAAGACCATGTTAATGTACCAGTTCCGTGGTCAAGGTTCAAGGACTTGTTGTACGACTACTATTACCCGGAGACTGTGAAAGATACGAAGGAGGCA
GAATTCCTCCATCTCACCCAAGGAACCTTGACGGTAGCACAATATGAATGGAAGTTTATGGAACTCTCTCGTTTTGCTCTGGAATTAATTCCCACCGAGGTAGTGAAGAT
CAAAAGGTTTGTTAAAGGCTTACGCAAGGGGATCAGAGGACCAGTGGATCTTCAGCGACCCGCCACCTACACGGAAGCAGTTAGGGGCTCTTTAATTATGGATAAGGATG
TCTTTAACAAGGCCCAACCTCTACTAGAAGTCGGTTCATCTTCAGGTGTGAAAAGGAAAGTCCCTCCGAATTATGCCGACCAGCCATTTAGAGCACCCCAGCGCTAG
Protein sequenceShow/hide protein sequence
MLLINAANCHRGGRFRSGGGSCHHTGTAATVCHSSSGPGLPPCHHQTMPSRRSMRLRADVGPALGGENVADPPPPAVGGQVGVVPPIPLVETQGQVNPPVPPAVPHVNPQ
VALLAKALQAPINNTTGVGGVQAQPPRHFHALQGEAKFIKDLKHYGPPTFDGGRRKREYNSSRRGVRELEALYAYLVAKDHVNVPVPWSRFKDLLYDYYYPETVKDTKEA
EFLHLTQGTLTVAQYEWKFMELSRFALELIPTEVVKIKRFVKGLRKGIRGPVDLQRPATYTEAVRGSLIMDKDVFNKAQPLLEVGSSSGVKRKVPPNYADQPFRAPQR