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Moc03g15520 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g15520
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr3:10345239..10356575
RNA-Seq ExpressionMoc03g15520
SyntenyMoc03g15520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]6.0e-1653.98Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD
        GYRCYCP L RYLVSPDV FFE+T F+SS S+  QG    EDD   +Y + S  T  L ++ SPS      P I+QVYSRR PP  S   P + LP   D
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD

Query:  PGTSDDLPISLRK
        P  SDDLPI+LRK
Subjt:  PGTSDDLPISLRK

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]6.0e-1653.98Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD
        GYRCYCP L RYLVSPDV FFE+T F+SS S+  QG    EDD   +Y + S  T  L ++ SPS      P I+QVYSRR PP  S   P + LP   D
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD

Query:  PGTSDDLPISLRK
        P  SDDLPI+LRK
Subjt:  PGTSDDLPISLRK

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]6.0e-1653.98Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD
        GYRCYCP L RYLVSPDV FFE+T F+SS S+  QG    EDD   +Y + S  T  L ++ SPS      P I+QVYSRR PP  S   P + LP   D
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD

Query:  PGTSDDLPISLRK
        P  SDDLPI+LRK
Subjt:  PGTSDDLPISLRK

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]6.0e-1653.98Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD
        GYRCYCP L RYLVSPDV FFE+T F+SS S+  QG    EDD   +Y + S  T  L ++ SPS      P I+QVYSRR PP  S   P + LP   D
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD

Query:  PGTSDDLPISLRK
        P  SDDLPI+LRK
Subjt:  PGTSDDLPISLRK

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]6.0e-1653.98Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD
        GYRCYCP L RYLVSPDV FFE+T F+SS S+  QG    EDD   +Y + S  T  L ++ SPS      P I+QVYSRR PP  S   P + LP   D
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLST-SQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLP--VD

Query:  PGTSDDLPISLRK
        P  SDDLPI+LRK
Subjt:  PGTSDDLPISLRK

TrEMBL top hitse value%identityAlignment
A0A438GAA6 Retrovirus-related Pol polyprotein from transposon TNT 1-947.4e-1244.72Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC
        GYRC+ PDLN+YLVS DV F E+TSF SS ++S    S+ED+ +LVY +++       +S  +  ++ +PS         P+ P I QVYSRR   TD+C
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC

Query:  HIPTASLPVDPGTSDDLPISLRK
          P  S   DP +  DLPISLRK
Subjt:  HIPTASLPVDPGTSDDLPISLRK

A0A438HEX0 Retrovirus-related Pol polyprotein from transposon TNT 1-947.4e-1244.72Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC
        GYRC+ PDLN+YLVS DV F E+TSF SS ++S    S+ED+ +LVY +++       +S  +  ++ +PS         P+ P I QVYSRR   TD+C
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC

Query:  HIPTASLPVDPGTSDDLPISLRK
          P  S   DP +  DLPISLRK
Subjt:  HIPTASLPVDPGTSDDLPISLRK

A0A438IRR9 Retrovirus-related Pol polyprotein from transposon TNT 1-947.4e-1244.72Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC
        GYRC+ PDLN+YLVS DV F E+TSF SS ++S    S+ED+ +LVY +++       +S  +  ++ +PS         P+ P I QVYSRR   TD+C
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC

Query:  HIPTASLPVDPGTSDDLPISLRK
          P  S   DP +  DLPISLRK
Subjt:  HIPTASLPVDPGTSDDLPISLRK

A5AWD0 Uncharacterized protein7.4e-1244.72Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC
        GYRC+ PDLN+YLVS DV F E+TSF SS ++S    S+ED+ +LVY +++       +S  +  ++ +PS         P+ P I QVYSRR   TD+C
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILS-------TSTEELPSNTSPSA------SDPSLPTITQVYSRRQPPTDSC

Query:  HIPTASLPVDPGTSDDLPISLRK
          P  S   DP +  DLPISLRK
Subjt:  HIPTASLPVDPGTSDDLPISLRK

Q6L3Q0 Polyprotein, putative4.4e-1244.88Show/hide
Query:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILSTSTE---ELPSNTSPS----ASDPSL----PTITQVYSRRQPPTDSCHI
        GYRCY P LNRY+VS DV F E+ SF SS  T   +  QED+ +L+Y    + +E   E+P +   S    +SD  L    P I QVYSRRQ   D+C  
Subjt:  GYRCYCPDLNRYLVSPDVTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILSTSTE---ELPSNTSPS----ASDPSL----PTITQVYSRRQPPTDSCHI

Query:  PTAS----LPVDPGTSD--DLPISLRK
        PT S    LPV+P  ++  D+PI+LRK
Subjt:  PTAS----LPVDPGTSD--DLPISLRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACACGCGGAGGCGACCTCTCAGGACAGTTGGATCATGGACCTGGTGGAGCATCTGAAGGAAACTGAGGATAAATTGCTTAAAGTCGAAGAGGGGCAAGCAATGGT
GGCGGCCGAATTGTCCTTAAGCAAAAAGGCTGAGGAGAGTGCTCTGGATTCTTTAAACCAAGAGTCTACCAAGGTCGCTAGTCTCGAAGTGGCTCTAGCTGAAGCCAAGG
CCATCTTGGATGACACAGAGCTTGTAAATTCTCACTTTCACGGCACGGATGGTTTTCGTGCTTTTGAGCAAGAGTTTCAACGTACAGGGCTGAACTTTGTGCGGGTTCGC
CTGAAAGATCAGTATCTTGAAGAGTGGCAACGCGTTCTTGATGCCTTCGAGCGCTTCTGGTTTCATCTCGCCGCCAAACGCCATCGCCATGTGTTTTCGTCACCGCCAGT
CGCCACCCGTCGCCTTCACCCCTCGGGTTGTCGTGGGGTAGCACTTAGGGTTTCTGTTGAGAAGAAAGTAATGGTAACGATTTCTACGGAAGAGTTTGCTAAATTCCAAC
AGTATCAAGAGTCATTCATGGCATCATCCTCTAATCCAATCACTATCATTGCTGATTCAGGATATCGATGTTATTGTCCTGATCTCAATAGATATCTTGTCTCTCCTGAC
GTTACGTTCTTTGAAAATACTTCTTTTTCATCGTCCTTGAGTACCAGTCAGGGGGAGCAGTCACAGGAAGATGATACCTTTCTTGTCTATTTTATTCTCTCTACTTCTAC
TGAAGAACTTCCTAGCAATACATCTCCCTCTGCGTCTGATCCTTCTCTCCCCACTATTACTCAAGTTTATTCTCGTCGGCAACCTCCTACGGACTCATGCCATATACCAA
CAGCTTCTTTGCCTGTGGATCCAGGAACGAGTGATGACCTTCCTATTTCCCTTCGAAAAGCTTGCTCTTCTGACTGTGGTGCAGTTCGTTTGCCAACTGCCCCACTTGCA
TCTCTAGATTTCTCATGGCAATGTCATTTCTTGTCATGTACTCTTTCATTAAGGCTTCCAAACTTCTATTGTTACCACCTTGCTGATTATTATTCTGCGCTTTCTGTTGG
TTGTATTGTTGTGGTGGTGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACACGCGGAGGCGACCTCTCAGGACAGTTGGATCATGGACCTGGTGGAGCATCTGAAGGAAACTGAGGATAAATTGCTTAAAGTCGAAGAGGGGCAAGCAATGGT
GGCGGCCGAATTGTCCTTAAGCAAAAAGGCTGAGGAGAGTGCTCTGGATTCTTTAAACCAAGAGTCTACCAAGGTCGCTAGTCTCGAAGTGGCTCTAGCTGAAGCCAAGG
CCATCTTGGATGACACAGAGCTTGTAAATTCTCACTTTCACGGCACGGATGGTTTTCGTGCTTTTGAGCAAGAGTTTCAACGTACAGGGCTGAACTTTGTGCGGGTTCGC
CTGAAAGATCAGTATCTTGAAGAGTGGCAACGCGTTCTTGATGCCTTCGAGCGCTTCTGGTTTCATCTCGCCGCCAAACGCCATCGCCATGTGTTTTCGTCACCGCCAGT
CGCCACCCGTCGCCTTCACCCCTCGGGTTGTCGTGGGGTAGCACTTAGGGTTTCTGTTGAGAAGAAAGTAATGGTAACGATTTCTACGGAAGAGTTTGCTAAATTCCAAC
AGTATCAAGAGTCATTCATGGCATCATCCTCTAATCCAATCACTATCATTGCTGATTCAGGATATCGATGTTATTGTCCTGATCTCAATAGATATCTTGTCTCTCCTGAC
GTTACGTTCTTTGAAAATACTTCTTTTTCATCGTCCTTGAGTACCAGTCAGGGGGAGCAGTCACAGGAAGATGATACCTTTCTTGTCTATTTTATTCTCTCTACTTCTAC
TGAAGAACTTCCTAGCAATACATCTCCCTCTGCGTCTGATCCTTCTCTCCCCACTATTACTCAAGTTTATTCTCGTCGGCAACCTCCTACGGACTCATGCCATATACCAA
CAGCTTCTTTGCCTGTGGATCCAGGAACGAGTGATGACCTTCCTATTTCCCTTCGAAAAGCTTGCTCTTCTGACTGTGGTGCAGTTCGTTTGCCAACTGCCCCACTTGCA
TCTCTAGATTTCTCATGGCAATGTCATTTCTTGTCATGTACTCTTTCATTAAGGCTTCCAAACTTCTATTGTTACCACCTTGCTGATTATTATTCTGCGCTTTCTGTTGG
TTGTATTGTTGTGGTGGTGACGTAG
Protein sequenceShow/hide protein sequence
MAHAEATSQDSWIMDLVEHLKETEDKLLKVEEGQAMVAAELSLSKKAEESALDSLNQESTKVASLEVALAEAKAILDDTELVNSHFHGTDGFRAFEQEFQRTGLNFVRVR
LKDQYLEEWQRVLDAFERFWFHLAAKRHRHVFSSPPVATRRLHPSGCRGVALRVSVEKKVMVTISTEEFAKFQQYQESFMASSSNPITIIADSGYRCYCPDLNRYLVSPD
VTFFENTSFSSSLSTSQGEQSQEDDTFLVYFILSTSTEELPSNTSPSASDPSLPTITQVYSRRQPPTDSCHIPTASLPVDPGTSDDLPISLRKACSSDCGAVRLPTAPLA
SLDFSWQCHFLSCTLSLRLPNFYCYHLADYYSALSVGCIVVVVT