; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g15580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g15580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:10397800..10398806
RNA-Seq ExpressionMoc03g15580
SyntenyMoc03g15580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144033.1 uncharacterized protein LOC111013825 [Momordica charantia]4.6e-1473.68Show/hide
Query:  VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
        V+A KA+CEKKG+ FDDG++GESPFTS ILE  IPPKF T  M PYDGS DPKDYVE
Subjt:  VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

XP_022151719.1 uncharacterized protein LOC111019634 [Momordica charantia]2.2e-1642.5Show/hide
Query:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVD--YSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------
        NR   +D+H     +    HL    +    GG D  Y+ Q  DLR+ L   +K S+S   G SPSC  + SN   + S+                     
Subjt:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVD--YSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------

Query:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
           V+A KAKCEKK + FDDG++GESPFTS ILE  IP KF T  MKPYDGS DPKDYVE
Subjt:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

XP_022154406.1 uncharacterized protein LOC111021683 [Momordica charantia]1.2e-1440.26Show/hide
Query:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF--------------------------VKAFKAKC
        G+   P +   D   + N+GG+DYS +++D+RK LT+KKK  AS     S S  RK+SNSN K                             V+A KA+C
Subjt:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF--------------------------VKAFKAKC

Query:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVEKAARK
        EKK   FD+G++GESPFT  ILE  IPPKF T  MKPYDG      +V ++  K
Subjt:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVEKAARK

XP_022155139.1 uncharacterized protein LOC111022280 [Momordica charantia]3.3e-2046.98Show/hide
Query:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSN------FKPSF--------------------VKAFKAKC
        G+   P +   +   + N+ GVDYS +++DLRK LTDKKK  AS     S S  R++SNSN      +KP                      V+A KA+C
Subjt:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSN------FKPSF--------------------VKAFKAKC

Query:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
        EKK +PFDD ++GESPFTS I+E  IPPKF T  MKPYDGS DPKDYVE
Subjt:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

XP_022159327.1 uncharacterized protein LOC111025738 [Momordica charantia]2.8e-1935Show/hide
Query:  MVQPANSANSTDQRGLNGNNGPLREA----------EGL------------LKIKSEQSRRPAKTGQGRGGISKKSSNRIALVADPEVLATLQRELD-MR
        MVQP +S N+ D+R L  N+G  RE           EGL                S    +P K  +GRGG S++++   A     E    LQ+E++ MR
Subjt:  MVQPANSANSTDQRGLNGNNGPLREA----------EGL------------LKIKSEQSRRPAKTGQGRGGISKKSSNRIALVADPEVLATLQRELD-MR

Query:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTD--KKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------
         +    +  Y           ++ V+    G     R   D R  L D   +K S+S   G SPSC  K SN   + S+                     
Subjt:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTD--KKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------

Query:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
           V+  KA+CE KG+ FDDG++GESPFTS ILE  IP KF T  MKPYDGS DPKDYVE
Subjt:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

TrEMBL top hitse value%identityAlignment
A0A6J1CS66 uncharacterized protein LOC1110138252.2e-1473.68Show/hide
Query:  VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
        V+A KA+CEKKG+ FDDG++GESPFTS ILE  IPPKF T  M PYDGS DPKDYVE
Subjt:  VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

A0A6J1DDW5 uncharacterized protein LOC1110196341.1e-1642.5Show/hide
Query:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVD--YSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------
        NR   +D+H     +    HL    +    GG D  Y+ Q  DLR+ L   +K S+S   G SPSC  + SN   + S+                     
Subjt:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVD--YSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------

Query:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
           V+A KAKCEKK + FDDG++GESPFTS ILE  IP KF T  MKPYDGS DPKDYVE
Subjt:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

A0A6J1DNM4 Ribonuclease H5.9e-1540.26Show/hide
Query:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF--------------------------VKAFKAKC
        G+   P +   D   + N+GG+DYS +++D+RK LT+KKK  AS     S S  RK+SNSN K                             V+A KA+C
Subjt:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSF--------------------------VKAFKAKC

Query:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVEKAARK
        EKK   FD+G++GESPFT  ILE  IPPKF T  MKPYDG      +V ++  K
Subjt:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVEKAARK

A0A6J1DPC9 uncharacterized protein LOC1110222801.6e-2046.98Show/hide
Query:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSN------FKPSF--------------------VKAFKAKC
        G+   P +   +   + N+ GVDYS +++DLRK LTDKKK  AS     S S  R++SNSN      +KP                      V+A KA+C
Subjt:  GDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSN------FKPSF--------------------VKAFKAKC

Query:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
        EKK +PFDD ++GESPFTS I+E  IPPKF T  MKPYDGS DPKDYVE
Subjt:  EKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

A0A6J1DZJ1 uncharacterized protein LOC1110257381.4e-1935Show/hide
Query:  MVQPANSANSTDQRGLNGNNGPLREA----------EGL------------LKIKSEQSRRPAKTGQGRGGISKKSSNRIALVADPEVLATLQRELD-MR
        MVQP +S N+ D+R L  N+G  RE           EGL                S    +P K  +GRGG S++++   A     E    LQ+E++ MR
Subjt:  MVQPANSANSTDQRGLNGNNGPLREA----------EGL------------LKIKSEQSRRPAKTGQGRGGISKKSSNRIALVADPEVLATLQRELD-MR

Query:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTD--KKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------
         +    +  Y           ++ V+    G     R   D R  L D   +K S+S   G SPSC  K SN   + S+                     
Subjt:  NRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGVDYSRQEDDLRKVLTD--KKKNSASCGLGASPSCYRKYSNSNFKPSF---------------------

Query:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE
           V+  KA+CE KG+ FDDG++GESPFTS ILE  IP KF T  MKPYDGS DPKDYVE
Subjt:  ---VKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKF-TLAMKPYDGSNDPKDYVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAACCAGCGAACTCTGCAAACTCCACAGATCAGAGAGGCTTGAATGGCAATAACGGTCCCCTGCGTGAGGCTGAGGGATTGCTGAAGATCAAGTCCGAGCAGAG
CAGAAGACCTGCCAAGACTGGTCAAGGTCGAGGTGGGATCTCGAAAAAATCCTCGAATAGGATCGCACTAGTTGCAGATCCTGAAGTTCTCGCTACCCTCCAGCGGGAGC
TTGATATGCGCAACCGAGGCGGGGTAGACGACCTGCATTACGACGGAGATGATCAAGATCCACCACTCCACCTTGACGACAACGTACGCGTCGGCAACAATGGAGGGGTC
GACTACAGTCGGCAAGAGGACGACCTGAGAAAAGTCCTTACTGACAAGAAGAAGAACTCCGCCTCGTGCGGACTGGGTGCTTCTCCTTCTTGTTATCGGAAGTACTCCAA
TTCCAACTTCAAACCCAGTTTCGTCAAGGCATTTAAGGCAAAGTGCGAAAAGAAGGGTAACCCATTCGATGACGGCGAAATGGGCGAGTCGCCATTCACATCGGGTATCT
TGGAGGTGTCTATCCCTCCTAAGTTCACGCTTGCCATGAAGCCCTATGATGGGTCTAACGACCCAAAAGATTATGTTGAGAAGGCTGCCCGCAAGGTCGATCTCGACCTA
CAACCAGCTGAAGAAAGATTTTATCAGCCAATTCTCTTCTCGGCACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAACCAGCGAACTCTGCAAACTCCACAGATCAGAGAGGCTTGAATGGCAATAACGGTCCCCTGCGTGAGGCTGAGGGATTGCTGAAGATCAAGTCCGAGCAGAG
CAGAAGACCTGCCAAGACTGGTCAAGGTCGAGGTGGGATCTCGAAAAAATCCTCGAATAGGATCGCACTAGTTGCAGATCCTGAAGTTCTCGCTACCCTCCAGCGGGAGC
TTGATATGCGCAACCGAGGCGGGGTAGACGACCTGCATTACGACGGAGATGATCAAGATCCACCACTCCACCTTGACGACAACGTACGCGTCGGCAACAATGGAGGGGTC
GACTACAGTCGGCAAGAGGACGACCTGAGAAAAGTCCTTACTGACAAGAAGAAGAACTCCGCCTCGTGCGGACTGGGTGCTTCTCCTTCTTGTTATCGGAAGTACTCCAA
TTCCAACTTCAAACCCAGTTTCGTCAAGGCATTTAAGGCAAAGTGCGAAAAGAAGGGTAACCCATTCGATGACGGCGAAATGGGCGAGTCGCCATTCACATCGGGTATCT
TGGAGGTGTCTATCCCTCCTAAGTTCACGCTTGCCATGAAGCCCTATGATGGGTCTAACGACCCAAAAGATTATGTTGAGAAGGCTGCCCGCAAGGTCGATCTCGACCTA
CAACCAGCTGAAGAAAGATTTTATCAGCCAATTCTCTTCTCGGCACTATGA
Protein sequenceShow/hide protein sequence
MVQPANSANSTDQRGLNGNNGPLREAEGLLKIKSEQSRRPAKTGQGRGGISKKSSNRIALVADPEVLATLQRELDMRNRGGVDDLHYDGDDQDPPLHLDDNVRVGNNGGV
DYSRQEDDLRKVLTDKKKNSASCGLGASPSCYRKYSNSNFKPSFVKAFKAKCEKKGNPFDDGEMGESPFTSGILEVSIPPKFTLAMKPYDGSNDPKDYVEKAARKVDLDL
QPAEERFYQPILFSAL