; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc03g16280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr3:10783268..10783942
RNA-Seq ExpressionMoc03g16280
SyntenyMoc03g16280
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141796.1 uncharacterized protein LOC111012081 [Momordica charantia]2.7e-3238.79Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P +KPYD   +P D++E++EGLM+  A  D +KCRAF + L G AR WYR+L ++SI+ + QLR+ F+ QFS++H  KK+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTS-----KHVRARGQSSQSKKS-
        E+L E+V RF  E++KV  CS+D A   F++ +    L      +   T+TE +Q+ +K +   ++L+ K  + +   S     K +      S+ K S 
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTS-----KHVRARGQSSQSKKS-

Query:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD
         SGR + R+A      SRP +     TIP+ +
Subjt:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD

XP_022151609.1 uncharacterized protein LOC111019523 [Momordica charantia]1.9e-121100Show/hide
Query:  MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ
        MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ
Subjt:  MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ

Query:  EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG
        EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG
Subjt:  EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG

Query:  RDDRRKANFDSRPRQECTIPVYDR
        RDDRRKANFDSRPRQECTIPVYDR
Subjt:  RDDRRKANFDSRPRQECTIPVYDR

XP_022155997.1 uncharacterized protein LOC111022972 [Momordica charantia]3.2e-3361.48Show/hide
Query:  KSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG
        KS THL+TI QEE ESL EFVGRF+ EKIKV D S+DVARMTFM  +N  +LIQSYALQP  TY+EAIQRAR++MHA+D+LK K LQ+QT TSK+ R+R 
Subjt:  KSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG

Query:  QSSQSKKSHSGRDDRRKANFDSRPRQECTIPVYDR
          S  KK HS + D ++AN D+RP    T+ V +R
Subjt:  QSSQSKKSHSGRDDRRKANFDSRPRQECTIPVYDR

XP_022156542.1 uncharacterized protein LOC111023421 [Momordica charantia]2.1e-3238.79Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P +KPYD   +P D++E++EGLM+  A  D +KCRAF + L G AR WYR+L  +SI+ + QLR+ F+ QFS++H  KK+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQT-----TTSKHVRARGQSSQSKKS-
        E+L E+V RF  E++KV  CS+D A   F++ +    L      +   T+ E +Q+A+K +  +++L+ K  + +       + K V      S+ K S 
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQT-----TTSKHVRARGQSSQSKKS-

Query:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD
         SGR + R+A      SRP +     TIP+++
Subjt:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]1.5e-3340.39Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P MKPYD   +P D++E++EGLM+  A  D +KCRAF + L   AR WYR+L ++SI+ + QLRK FI+QFS++H  +K+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLK------YKQLQHQTTTSKHVRARGQSSQSKKS
        E+L E+V RF+ E++KV  CS+D A   F++ +   NL      +   T+ E +Q+A+K +  +++L+       KQ+  +    +  +A  +S     S
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLK------YKQLQHQTTTSKHVRARGQSSQSKKS

Query:  HSG
         SG
Subjt:  HSG

TrEMBL top hitse value%identityAlignment
A0A6J1CKB3 uncharacterized protein LOC1110120811.3e-3238.79Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P +KPYD   +P D++E++EGLM+  A  D +KCRAF + L G AR WYR+L ++SI+ + QLR+ F+ QFS++H  KK+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTS-----KHVRARGQSSQSKKS-
        E+L E+V RF  E++KV  CS+D A   F++ +    L      +   T+TE +Q+ +K +   ++L+ K  + +   S     K +      S+ K S 
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTS-----KHVRARGQSSQSKKS-

Query:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD
         SGR + R+A      SRP +     TIP+ +
Subjt:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD

A0A6J1DDJ7 uncharacterized protein LOC1110195239.0e-122100Show/hide
Query:  MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ
        MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ
Subjt:  MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQ

Query:  EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG
        EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG
Subjt:  EEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSG

Query:  RDDRRKANFDSRPRQECTIPVYDR
        RDDRRKANFDSRPRQECTIPVYDR
Subjt:  RDDRRKANFDSRPRQECTIPVYDR

A0A6J1DQW1 uncharacterized protein LOC1110229721.6e-3361.48Show/hide
Query:  KSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG
        KS THL+TI QEE ESL EFVGRF+ EKIKV D S+DVARMTFM  +N  +LIQSYALQP  TY+EAIQRAR++MHA+D+LK K LQ+QT TSK+ R+R 
Subjt:  KSDTHLLTIFQEEGESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG

Query:  QSSQSKKSHSGRDDRRKANFDSRPRQECTIPVYDR
          S  KK HS + D ++AN D+RP    T+ V +R
Subjt:  QSSQSKKSHSGRDDRRKANFDSRPRQECTIPVYDR

A0A6J1DS95 uncharacterized protein LOC1110234211.0e-3238.79Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P +KPYD   +P D++E++EGLM+  A  D +KCRAF + L G AR WYR+L  +SI+ + QLR+ F+ QFS++H  KK+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQT-----TTSKHVRARGQSSQSKKS-
        E+L E+V RF  E++KV  CS+D A   F++ +    L      +   T+ E +Q+A+K +  +++L+ K  + +       + K V      S+ K S 
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQT-----TTSKHVRARGQSSQSKKS-

Query:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD
         SGR + R+A      SRP +     TIP+++
Subjt:  HSGRDDRRKAN---FDSRPRQE---CTIPVYD

A0A6J1DY58 uncharacterized protein LOC1110256637.1e-3440.39Show/hide
Query:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG
        P+PPK K P MKPYD   +P D++E++EGLM+  A  D +KCRAF + L   AR WYR+L ++SI+ + QLRK FI+QFS++H  +K+ THL TI Q+EG
Subjt:  PLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEG

Query:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLK------YKQLQHQTTTSKHVRARGQSSQSKKS
        E+L E+V RF+ E++KV  CS+D A   F++ +   NL      +   T+ E +Q+A+K +  +++L+       KQ+  +    +  +A  +S     S
Subjt:  ESLHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLK------YKQLQHQTTTSKHVRARGQSSQSKKS

Query:  HSG
         SG
Subjt:  HSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATCCTCTACCACCAAAGATGAAGAAACCGGATATGAAGCCTTATGACAATTTCGCCAACCCAATTGACCATATAGAATTGTATGAGGGATTGATGGAA
CTTAGTGCCATGGGGGACAAAATGAAATGTCGGGCTTTCTCGGTGACTTTAAAAGGTCGAGCAAGATCTTGGTATCGGCAGCTAAAATCGAAATCCATAGCCTTA
TGGATACAATTGAGGAAAGTCTTTATTAATCAGTTCTCGGCTCAGCATGACCGGAAGAAGTCGGATACCCATCTGTTGACCATCTTCCAAGAGGAAGGTGAGTCG
CTACATGAGTTTGTAGGAAGGTTTGTGACGGAAAAGATAAAAGTTTTGGATTGTTCGAATGATGTGGCCAGAATGACATTCATGTCCATCATAAACACTCCCAAC
TTAATTCAGTCCTACGCATTACAACCGAAGCGTACTTATACTGAAGCCATTCAACGAGCTCGGAAGTATATGCATGCTGAAGATGTGCTTAAATATAAACAGCTC
CAGCACCAGACCACAACTTCAAAGCATGTACGAGCTCGGGGCCAAAGTTCCCAGTCTAAAAAGAGCCATTCGGGTAGGGATGACCGAAGGAAGGCGAATTTTGAT
AGCCGACCACGACAAGAGTGTACCATACCAGTATATGATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATCCTCTACCACCAAAGATGAAGAAACCGGATATGAAGCCTTATGACAATTTCGCCAACCCAATTGACCATATAGAATTGTATGAGGGATTGATGGAA
CTTAGTGCCATGGGGGACAAAATGAAATGTCGGGCTTTCTCGGTGACTTTAAAAGGTCGAGCAAGATCTTGGTATCGGCAGCTAAAATCGAAATCCATAGCCTTA
TGGATACAATTGAGGAAAGTCTTTATTAATCAGTTCTCGGCTCAGCATGACCGGAAGAAGTCGGATACCCATCTGTTGACCATCTTCCAAGAGGAAGGTGAGTCG
CTACATGAGTTTGTAGGAAGGTTTGTGACGGAAAAGATAAAAGTTTTGGATTGTTCGAATGATGTGGCCAGAATGACATTCATGTCCATCATAAACACTCCCAAC
TTAATTCAGTCCTACGCATTACAACCGAAGCGTACTTATACTGAAGCCATTCAACGAGCTCGGAAGTATATGCATGCTGAAGATGTGCTTAAATATAAACAGCTC
CAGCACCAGACCACAACTTCAAAGCATGTACGAGCTCGGGGCCAAAGTTCCCAGTCTAAAAAGAGCCATTCGGGTAGGGATGACCGAAGGAAGGCGAATTTTGAT
AGCCGACCACGACAAGAGTGTACCATACCAGTATATGATCGATGA
Protein sequenceShow/hide protein sequence
MAYPLPPKMKKPDMKPYDNFANPIDHIELYEGLMELSAMGDKMKCRAFSVTLKGRARSWYRQLKSKSIALWIQLRKVFINQFSAQHDRKKSDTHLLTIFQEEGES
LHEFVGRFVTEKIKVLDCSNDVARMTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARGQSSQSKKSHSGRDDRRKANFD
SRPRQECTIPVYDR