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Moc03g16360 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc03g16360
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr3:10836025..10837106
RNA-Seq ExpressionMoc03g16360
SyntenyMoc03g16360
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-3956.21Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        M++L++ L A+EK N +NYT WK+NLNTILVVDDL                         RWIKA++KA+VYIL S+SDVLAKKHE++  A+EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        MFGQP    RHKA+K+IY  RMKEGTS++EHVL +M+HFN+AEVNG  IDE +
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]5.6e-4566.23Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MST +IAL A ++ NGENY QWK+NLNTILV+DDL                         RWIKA+DKAKVYIL SISDVLAKKHE+ + A+EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDE
        MFGQPS QARH+ALKFIYNSRMKEG+S++EHVLNLMVHFNVAE NG VIDE
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDE

XP_022155999.1 uncharacterized protein LOC111022974 [Momordica charantia]1.4e-4094.62Show/hide
Query:  RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        RWIKA+DKAKVYIL SISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARH+ALKFIYNSRMKEGTSMQEHVLNLMVHFNVAE+NG VIDEGS
Subjt:  RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.5e-4565.36Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MS  +IAL A +K NGENY QWK+NLNTILV+DDL                         RWIK++DKAKVYIL SISDVLAKKHE+ V  +EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        MFGQPS+QARH+ALKF+YNSRMKEG+S++EHVLNLMVHFNVAE NGIVIDE S
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

XP_038904195.1 uncharacterized protein LOC120090541 [Benincasa hispida]1.7e-3854.9Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDLR-------------------------WIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MST +I L A+EK NG+NY  WK+N+NTILV+DDLR                         W+KA++KA+VYIL SI DVL+KKHE +  A+EI+DSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDLR-------------------------WIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        +FGQPS  A H A+KF+YN RMKEGT ++EHVLN+MVHFN+AEVNG+V++E S
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein3.8e-3956.21Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        M++L++ L A+EK N +NYT WK+NLNTILVVDDL                         RWIKA++KA+VYIL S+SDVLAKKHE++  A+EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        MFGQP    RHKA+K+IY  RMKEGTS++EHVL +M+HFN+AEVNG  IDE +
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

A0A6J1DFZ2 uncharacterized protein LOC1110200952.7e-4566.23Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MST +IAL A ++ NGENY QWK+NLNTILV+DDL                         RWIKA+DKAKVYIL SISDVLAKKHE+ + A+EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDE
        MFGQPS QARH+ALKFIYNSRMKEG+S++EHVLNLMVHFNVAE NG VIDE
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDE

A0A6J1DRZ2 uncharacterized protein LOC1110229746.9e-4194.62Show/hide
Query:  RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        RWIKA+DKAKVYIL SISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARH+ALKFIYNSRMKEGTSMQEHVLNLMVHFNVAE+NG VIDEGS
Subjt:  RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRDMFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

A0A6J1DW68 uncharacterized protein LOC1110246371.4e-3860.13Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MST +I L   +K N ENY QWK+N+NTIL++DDL                         RWIKA+DKAKV IL SISDVLAKKHEN V  +EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        MFGQPS QARH+AL  IYNSRMK+ +S++EHVLNLMVHFNVAE N  VIDE S
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

A0A6J1DWL0 uncharacterized protein LOC1110247341.2e-4565.36Show/hide
Query:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD
        MS  +IAL A +K NGENY QWK+NLNTILV+DDL                         RWIK++DKAKVYIL SISDVLAKKHE+ V  +EIMDSL+ 
Subjt:  MSTLVIALFATEKHNGENYTQWKTNLNTILVVDDL-------------------------RWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRD

Query:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS
        MFGQPS+QARH+ALKF+YNSRMKEG+S++EHVLNLMVHFNVAE NGIVIDE S
Subjt:  MFGQPSIQARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCTGCCTCCCTACGGAAGGTGTTTGCATGGTTCAATACCAAGCATGTCTACTTTGGTTATTGCCCTGTTTGCCACCGAA
AAACATAACGGCGAAAATTACACACAATGGAAAACGAACCTTAACACGATACTTGTGGTAGATGATCTTAGGTGGATCAAAGCCGATGATAAGGCTAAGGTCTAC
ATCTTGGTGAGCATATCTGATGTGCTAGCCAAGAAGCACGAGAACATGGTCAACGCACAAGAGATCATGGACTCGTTGCGGGACATGTTTGGACAGCCATCCATT
CAAGCCCGACACAAAGCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGGACATCAATGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCT
GAAGTGAACGGGATTGTCATAGACGAGGGAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGCCTCGTGTCGCCCTGGGCGCTGCCTCCCTACGGAAGGTGTTTGCATGGTTCAATACCAAGCATGTCTACTTTGGTTATTGCCCTGTTTGCCACCGAA
AAACATAACGGCGAAAATTACACACAATGGAAAACGAACCTTAACACGATACTTGTGGTAGATGATCTTAGGTGGATCAAAGCCGATGATAAGGCTAAGGTCTAC
ATCTTGGTGAGCATATCTGATGTGCTAGCCAAGAAGCACGAGAACATGGTCAACGCACAAGAGATCATGGACTCGTTGCGGGACATGTTTGGACAGCCATCCATT
CAAGCCCGACACAAAGCCCTCAAGTTCATTTACAATTCCCGCATGAAAGAAGGGACATCAATGCAAGAACATGTTCTCAATCTGATGGTCCACTTTAATGTGGCT
GAAGTGAACGGGATTGTCATAGACGAGGGAAGCTAG
Protein sequenceShow/hide protein sequence
MLGLVSPWALPPYGRCLHGSIPSMSTLVIALFATEKHNGENYTQWKTNLNTILVVDDLRWIKADDKAKVYILVSISDVLAKKHENMVNAQEIMDSLRDMFGQPSI
QARHKALKFIYNSRMKEGTSMQEHVLNLMVHFNVAEVNGIVIDEGS